Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12b13
         (671 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457211-1|CAG33492.1|  615|Homo sapiens LMO6 protein.                 31   5.0  
BT007423-1|AAP36091.1|  615|Homo sapiens LIM domain only 6 protein.    31   5.0  
BC016856-1|AAH16856.1|  615|Homo sapiens LIM domain only 6 protein.    31   5.0  
BC002468-1|AAH02468.1|  615|Homo sapiens LIM domain only 6 protein.    31   5.0  
AJ011654-1|CAA09726.1|  615|Homo sapiens triple LIM domain prote...    31   5.0  
AF063601-1|AAG43160.1|  647|Homo sapiens brain my043 protein pro...    31   5.0  
AY534243-1|AAT07092.1|  523|Homo sapiens XK-related protein 5b p...    30   8.7  
AY534242-1|AAT07091.1|  686|Homo sapiens XK-related protein 5a p...    30   8.7  
AY358489-1|AAQ88853.1|  686|Homo sapiens HARL2754 protein.             30   8.7  

>CR457211-1|CAG33492.1|  615|Homo sapiens LMO6 protein.
          Length = 615

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 480 REAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*GRDPSARIHAGPRRTHSAHH 641
           R++   V++  PL  + G  R     PA R+RP  R P  R  +  R  H  HH
Sbjct: 468 RQSTPRVSFRDPLVSEGGPRRTLSAPPAQRRRP--RSPPPRAPSRRRHHHHNHH 519


>BT007423-1|AAP36091.1|  615|Homo sapiens LIM domain only 6 protein.
          Length = 615

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 480 REAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*GRDPSARIHAGPRRTHSAHH 641
           R++   V++  PL  + G  R     PA R+RP  R P  R  +  R  H  HH
Sbjct: 468 RQSTPRVSFRDPLVSEGGPRRTLSAPPAQRRRP--RSPPPRAPSRRRHHHHNHH 519


>BC016856-1|AAH16856.1|  615|Homo sapiens LIM domain only 6 protein.
          Length = 615

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 480 REAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*GRDPSARIHAGPRRTHSAHH 641
           R++   V++  PL  + G  R     PA R+RP  R P  R  +  R  H  HH
Sbjct: 468 RQSTPRVSFRDPLVSEGGPRRTLSAPPAQRRRP--RSPPPRAPSRRRHHHHNHH 519


>BC002468-1|AAH02468.1|  615|Homo sapiens LIM domain only 6 protein.
          Length = 615

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 480 REAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*GRDPSARIHAGPRRTHSAHH 641
           R++   V++  PL  + G  R     PA R+RP  R P  R  +  R  H  HH
Sbjct: 468 RQSTPRVSFRDPLVSEGGPRRTLSAPPAQRRRP--RSPPPRAPSRRRHHHHNHH 519


>AJ011654-1|CAA09726.1|  615|Homo sapiens triple LIM domain protein
           protein.
          Length = 615

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 480 REAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*GRDPSARIHAGPRRTHSAHH 641
           R++   V++  PL  + G  R     PA R+RP  R P  R  +  R  H  HH
Sbjct: 468 RQSTPRVSFRDPLVSEGGPRRTLSAPPAQRRRP--RSPPPRAPSRRRHHHHNHH 519


>AF063601-1|AAG43160.1|  647|Homo sapiens brain my043 protein
           protein.
          Length = 647

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 534 YQNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYS 370
           Y  H+ +++ T+   EP  D   Y E A+ E+P P H     D      P  ++S
Sbjct: 150 YLLHVDLIKETKLSAEPAPDFSDYSEMAKVEQPVPDHSELVEDSSPDSEPVDLFS 204


>AY534243-1|AAT07092.1|  523|Homo sapiens XK-related protein 5b
           protein.
          Length = 523

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 250 PGHVAAPWRSAPASQ-WRLHVLWYIVISLV 336
           PGH+A PW +    Q WR+ +L   V+SLV
Sbjct: 6   PGHLAMPWAALFCQQLWRMGMLGTRVLSLV 35


>AY534242-1|AAT07091.1|  686|Homo sapiens XK-related protein 5a
           protein.
          Length = 686

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 250 PGHVAAPWRSAPASQ-WRLHVLWYIVISLV 336
           PGH+A PW +    Q WR+ +L   V+SLV
Sbjct: 169 PGHLAMPWAALFCQQLWRMGMLGTRVLSLV 198


>AY358489-1|AAQ88853.1|  686|Homo sapiens HARL2754 protein.
          Length = 686

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 250 PGHVAAPWRSAPASQ-WRLHVLWYIVISLV 336
           PGH+A PW +    Q WR+ +L   V+SLV
Sbjct: 169 PGHLAMPWAALFCQQLWRMGMLGTRVLSLV 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,204,490
Number of Sequences: 237096
Number of extensions: 2030345
Number of successful extensions: 8931
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8910
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)