Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12b08
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 130 1e-31
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.33
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.33
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.75
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.00
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 1.00
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 1.00
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 28 1.3
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 28 1.3
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 28 1.3
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 28 1.3
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 2.3
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 2.3
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 27 3.0
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 26 4.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 4.0
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 4.0
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 26 5.3
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 5.3
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 26 5.3
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 5.3
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 26 5.3
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 5.3
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.0
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 25 7.0
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 7.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 7.0
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 7.0
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 25 7.0
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 9.3
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 25 9.3
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 25 9.3
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo... 25 9.3
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 25 9.3
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 25 9.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.3
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 25 9.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 130 bits (315), Expect = 1e-31
Identities = 59/101 (58%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
Frame = -1
Query: 620 RKLVYFSTECVFAPNAYRGHARALLKDMEKIRPSCIMDIIYSGETMSIKEEV--SLPTQR 447
+KL YFSTEC ++P A+RG ARA++K +E IRPS I+DIIYSGE+M + V LP Q
Sbjct: 226 KKLDYFSTECTYSPEAFRGTARAMIKQLENIRPSSILDIIYSGESMQLASSVQEQLPQQT 285
Query: 446 LCIRCNFVSSQEVCKACVLLEGLNKGLPKLGIGKSSKVKKL 324
C RC F+SS +CKAC+LLEGLNKG+ LG+G K KKL
Sbjct: 286 TCERCGFISSNRICKACMLLEGLNKGITGLGLGSDRKTKKL 326
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.9 bits (64), Expect = 0.33
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Frame = -1
Query: 416 QEVCKACVLLEGLNKGLPKLGIGKSSKVKKLLDEYNTRQNNLETAVKDLEDCNITDKKTS 237
+E+ K C LE + L + + + N+ +E K++E N + + +
Sbjct: 1355 EELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLA 1414
Query: 236 ----KTCKNISNGFKQKECNATNCCTNKTERNVEKN--NEKLQTVLDKYSLENNSQVKLD 75
+ C+N+ + + TNK + KN NE +Q ++ SL++++ +L
Sbjct: 1415 AAWNEKCENLKKSSLTRFAHLKQELTNKNKELTSKNAENEAMQKEIE--SLKDSNH-QLQ 1471
Query: 74 EEDSDDSE 51
E S D+E
Sbjct: 1472 ESASSDAE 1479
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.9 bits (64), Expect = 0.33
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Frame = -1
Query: 332 KKLLDEYNTRQNNLETAVKDLEDCNITDKKTSKTCKNISNGFKQKE---CNATNCCTNKT 162
KKL + + +NN +T K L+D T K + +N F+QKE + N K
Sbjct: 612 KKLNESHQELENNHQTITKQLKD---TSSKLQQLQLERAN-FEQKESTLSDENNDLRTKL 667
Query: 161 ERNVEKNNEKLQTVLDKYSLENNSQ-VKLDEEDSDDS 54
+ E N ++ D SLE N Q +K D S+++
Sbjct: 668 LKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEA 704
>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 163
Score = 28.7 bits (61), Expect = 0.75
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 146 KNNEKLQTVLDKYSLENNSQVKLDEEDSDDSEIK-PSR*RRHLAPSS 9
KN++ L+ L+K E N Q ++D DDS+ + SR +R A SS
Sbjct: 104 KNHDNLKRKLNKVGDELNEQQSDTDDDDDDSKARITSRSKRANAQSS 150
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 1.00
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -1
Query: 257 ITDKKTSKTCKNISNGFKQKECNATNCCTNKTERNVEKNNEK----LQTVLDKYSLENNS 90
I +KK S + + + + E +++ + + E VEK EK ++ D S ++S
Sbjct: 156 IEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSS 215
Query: 89 QVKLDEEDSDDSEIKPS 39
D + S DSE + S
Sbjct: 216 SESGDSDSSSDSESESS 232
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 28.3 bits (60), Expect = 1.00
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = -1
Query: 389 LEGLNKGLPKLGIGKSSKVKKLLDEYNTRQNNLETAVKDLEDCNITDKKTSKTCKNISNG 210
L+ +N L + K+SKV+ LL E N + L KDL D T + +N +
Sbjct: 913 LKQINNELESELLEKTSKVETLLSEQNELKEKLSLEEKDLLD---TKGELESLRENNATV 969
Query: 209 FKQKECNATNCCTNKTERNVEKNNE--KLQTVLDKYSLENNSQVKLDEEDSDDSEIK 45
+K C + E V K+ E KL + Y E +++L + ++ I+
Sbjct: 970 LSEK-AEFNEQCKSLQETIVTKDAELDKLTKYISDYKTE-IQEMRLTNQKMNEKSIQ 1024
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 1.00
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -1
Query: 302 QNNLETAVKDLEDCNITDKKTSKTCKNISNGF-KQKECN-ATNCCTNKTERNVEKNNE 135
+N +T +K+LED + K+ KN+ N KQ+ N N +++ +VE N++
Sbjct: 639 KNENQTLLKNLEDSTARYEHLQKSFKNVFNQLRKQQPSNHGRNSSVSRSSSSVEVNSK 696
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -1
Query: 311 NTRQNNLETAVKDLEDCNITDKKTSKTCKNISNG--FKQKECNATNCCTNKTERNVEKNN 138
N+RQ +L T VK NIT TC + N F KE ++++ + +E N
Sbjct: 623 NSRQIDLSTFVKQANTPNIT-SLLDGTCSSPPNNECFNDKEPDSSSSTLISDRQELEYRN 681
Query: 137 EKLQTV 120
+TV
Sbjct: 682 PNAETV 687
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 27.9 bits (59), Expect = 1.3
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Frame = -1
Query: 350 GKSSKVKKLLDEYNTRQNNLETAV------KDLEDCNITDKKTSKTCKNISNGFKQKECN 189
GK+ ++ LL+EY + +E+ V D K+ + K I +G ++E
Sbjct: 175 GKTEEISLLLEEYPDLRKQMESLVPSEVSYDDFWKRFFWHKEVVQPIKAIQSGNDEEEIF 234
Query: 188 ATNCCTNKTER--NVEKNNEKLQTVLDKYSLENNSQVKLDEEDSDDSEIKPSR 36
+ + E N + N+EK Q+ ++ + ENNS ++ +E +D E S+
Sbjct: 235 SWGDERSDEEESDNEQVNDEKKQS-SEEDTTENNSAAEVIDETVNDLESAVSK 286
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 633 YAHYKEISIFL-YRVCLRTECLQRTCTRLAQGYGKDKAVMHNGYYLF 496
+A K+I +F+ +C+ L + Y K+ A++HN Y L+
Sbjct: 256 FAKEKQIPLFIDAEQTYFQDCMHAVTVDLMRKYNKEVAIVHNTYQLY 302
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 347 KSSKVKKLLDEYNTRQNNLETAV--KDLEDCNI 255
KSS+V LL YNT +LE A+ KD E N+
Sbjct: 579 KSSEVSNLLSRYNTEVAHLEDALHSKDRELANL 611
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.1 bits (57), Expect = 2.3
Identities = 24/92 (26%), Positives = 40/92 (43%)
Frame = -1
Query: 404 KACVLLEGLNKGLPKLGIGKSSKVKKLLDEYNTRQNNLETAVKDLEDCNITDKKTSKTCK 225
K L E +N G KL + K+ L + T K+L+ T K + + K
Sbjct: 863 KCSNLQEKINFG-NKLAKEHTEKISSLEKDLEAATKTASTLSKELK----TVKSENDSLK 917
Query: 224 NISNGFKQKECNATNCCTNKTERNVEKNNEKL 129
++SN + KE + N + + + + NEKL
Sbjct: 918 SVSNDDQNKEKSVNNEKFKEVSQALAEANEKL 949
Score = 26.2 bits (55), Expect = 4.0
Identities = 27/87 (31%), Positives = 40/87 (45%)
Frame = -1
Query: 329 KLLDEYNTRQNNLETAVKDLEDCNITDKKTSKTCKNISNGFKQKECNATNCCTNKTERNV 150
KL E+ + ++LE KDLE T SK K + + + + +N NK E++V
Sbjct: 876 KLAKEHTEKISSLE---KDLEAATKTASTLSKELKTVKSENDSLK-SVSNDDQNK-EKSV 930
Query: 149 EKNNEKLQTVLDKYSLENNSQVKLDEE 69
NNEK + V + N DEE
Sbjct: 931 --NNEKFKEVSQALAEANEKLNARDEE 955
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/67 (32%), Positives = 38/67 (56%)
Frame = -1
Query: 245 KTSKTCKNISNGFKQKECNATNCCTNKTERNVEKNNEKLQTVLDKYSLENNSQVKLDEED 66
K SKT +N+S+ F +K N ++ K+ E++ T +K+ E S++ L+EE+
Sbjct: 688 KHSKTIENVSSNFSKKNRNVV------VSESLTKSMEEVLTP-EKF-YERLSKL-LEEEN 738
Query: 65 SDDSEIK 45
SD E+K
Sbjct: 739 SDLGELK 745
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 101 ENNSQVKLDEEDSDDSEIKPSR*RRHLAPSSCG 3
EN Q +E+D DD I PS R+ A G
Sbjct: 175 ENKEQEDNEEDDEDDGWITPSNIRKKKAEDGVG 207
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 26.2 bits (55), Expect = 4.0
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Frame = -1
Query: 320 DEYNTRQNNLETAVKDLEDCNITDKKTSKTCKNISNGFKQKECNATNCCTNKTERNVEKN 141
DE+ T + +ET V+ L +C + K S+ ++ K+ + + +E + ++
Sbjct: 74 DEFPTPKQIMETDVETLHECGFS-KLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMES 132
Query: 140 NEKLQTVLDKYSLENNSQV---KLDEEDSDDSEIK 45
K++ V ++++E S +LD +DDS +K
Sbjct: 133 LSKIKGV-KRWTIEMYSIFTLGRLDIMPADDSTLK 166
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = -1
Query: 119 LDKYS-LENNSQVKLDEEDSDDSEI 48
L+KYS +E NS++ DEE+ D+S I
Sbjct: 53 LEKYSKIELNSEIWEDEEEEDNSGI 77
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 215 NGFKQKECNATNCCTNKTERNVEKNNEKLQTVLDKYSLENNSQVKLDEEDSDDS 54
+G + + N N + E NVE+N E+ ++ E+ + DEED D+S
Sbjct: 79 DGNENEVDNVNNNDKKEDEDNVEENEEEADA--NEEEEEDEEDDEEDEEDEDES 130
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.8 bits (54), Expect = 5.3
Identities = 24/73 (32%), Positives = 34/73 (46%)
Frame = +1
Query: 274 SLTAVSKLFCLVLYSSSNFFTLELLPIPSFGNPLFKPSSKTHALHTSCDDTKLHLMHNLW 453
SL + S L L L + F ++ +PSF +PL KP+S + + S L N
Sbjct: 425 SLDSSSLLTPLALPNKKAFQPVKFR-VPSFSSPLVKPASSS-SFGRSHSHLGTSLRSNEL 482
Query: 454 VGSDTSSFIDIVS 492
GS SS I + S
Sbjct: 483 NGSSASSSIFLQS 495
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 5.3
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Frame = -1
Query: 353 IGKSSKVKKLLDEYNTRQNNLETAVKDLEDCNITDKKTSKTCKNISNGFKQKECNATNCC 174
I SKV L+ + ++TA L++ D K KN+ + QKE
Sbjct: 4 ISMKSKVCPLIYHFLQENGYVKTAQTFLKETGDKDLAKGKVKKNLLDLLSQKEFLPYLTT 63
Query: 173 TN-----KTERNVEKNNEKLQTVLDK---------YSLENNSQVKLDEEDSDDSEIKPS 39
+ KT+ ++EK+N+ Q + K S + S DE DS SE + S
Sbjct: 64 EDVGKHKKTKESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESS 122
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 290 ETAVKDLEDCNITDKKTSKTCKNISNGF 207
E + E C+++D TSKT +I N F
Sbjct: 3 EELFSNSETCSLSDPLTSKTLSSIENPF 30
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -1
Query: 206 KQKECNATNCCTNKTERNVEKNNEKLQTVLDKYSLENNSQVKLDEEDSDDSEIKP 42
++ E NA K +R E+N ++ K E N++ K +EE +++ P
Sbjct: 659 REAEENAKREAEEKAKREAEENAKREAEEKVKRETEENAKRKAEEEGKREADKNP 713
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 299 NNLETAVKDLEDCNITDKKTSKTCKNISNGFKQKEC 192
+N+E K +D N KT + ++++ FK+ C
Sbjct: 33 SNMEKEAKHEDDANTLQPKTEEEIESLAKLFKKPSC 68
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 149 EKNNEKLQTVLDKYSLENNSQVKLDEED 66
E+N + LQT +D L++NS +L E D
Sbjct: 404 EQNIKSLQTDIDNLCLQSNSLKQLSEVD 431
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 226 LQVLLVFLSVILQSSKSLTAVSKLFCLVL 312
L + ++FL ++L+ +L+ + +LFCL L
Sbjct: 177 LSLAILFLPLLLRVFSTLSRLPRLFCLCL 205
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 338 KVKKLLDEYNTRQNNLETAVKDLEDCNITDKKTSK 234
+ +KL + +Q+ L+ A+ DLE+ T K+TS+
Sbjct: 130 QTRKLSERTEKQQDELDIALDDLEETLNTLKRTSE 164
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 232 VLLVFLSVILQSSKSLTAVSKLFCLVLY 315
+LLVF++V +S L AVS +F +Y
Sbjct: 355 LLLVFMAVTSAASAELIAVSSIFTYDIY 382
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 310 LYSSSNFFTLELLPIPSFGNPLFKPSSKTHA 402
L++ ++FFT + L + G P F+P K A
Sbjct: 276 LFNDNSFFTAKALNVAIPGGPKFEPLYKDEA 306
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 178 QFVALHSFCLKPFDMFLQVLLVFLS-VILQSSKSLTAVSKLFCLVLYSSSNFF 333
Q++ ++SF +PF + L V++ LS V + + CL+L + FF
Sbjct: 94 QYLGIYSFSFQPFQL-LNVIIASLSMVFITLGAFVLGTLDTTCLLLLAFKLFF 145
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 7.0
Identities = 27/98 (27%), Positives = 42/98 (42%)
Frame = -1
Query: 341 SKVKKLLDEYNTRQNNLETAVKDLEDCNITDKKTSKTCKNISNGFKQKECNATNCCTNKT 162
S++++L E TR L+ K E+ D T + + SN +Q + +
Sbjct: 191 SELEELEREDFTR---LKKVQKTKENAEKADSVTKEEHQGGSNTLQQTK-DVGGAIAPAA 246
Query: 161 ERNVEKNNEKLQTVLDKYSLENNSQVKLDEEDSDDSEI 48
E E NE + D YSL + S +E DSD+ I
Sbjct: 247 EVGKEVINEVENSKDDTYSLPSTSTDDEEENDSDEEVI 284
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/70 (20%), Positives = 33/70 (47%)
Frame = -1
Query: 347 KSSKVKKLLDEYNTRQNNLETAVKDLEDCNITDKKTSKTCKNISNGFKQKECNATNCCTN 168
+ +KVK + N+++ +++ +D ++ + SK KN+ + + E +A N
Sbjct: 93 EKAKVKPKAKKKNSKEKISKSSKQDEHKTDVHKESVSKLSKNLESRNNRDENSAKREKNN 152
Query: 167 KTERNVEKNN 138
+ + NN
Sbjct: 153 SHQVEADTNN 162
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 296 NLETAVKDLEDCN--ITDKKTSKTCKNISNGFKQ 201
N E V+D+E+CN D + S S+GF Q
Sbjct: 423 NKEIGVQDIEECNDLFLDARRSAQVVKSSSGFLQ 456
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = -1
Query: 332 KKLLDEYNTRQNNLETAVKDLEDCNITDKKTSKTCKNISNGFKQKE 195
++L+DE + V + +C K + CKN + G ++ E
Sbjct: 162 QELIDEDELLDESAHDNVLKVPECKPEPGKKKRACKNCTCGLREME 207
>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 379 KPSSKTHALHTSCDDTKLH 435
+PSS THA+ S +D LH
Sbjct: 24 EPSSDTHAIEISSNDDYLH 42
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 214 FDMFLQVLLVFLSVILQSSKSLTAVSKLFCLVLYS 318
F +Q+ L+FL +L+S KS + ++ LY+
Sbjct: 573 FSQNVQIQLIFLDELLKSKKSENVLKFIYTRKLYA 607
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 170 NKTERNVEKNNEKLQTVLDKYSLENNSQVKLDEEDSDDSEIKPSR 36
++ E NVE+ +K +D E Q K DE++ DD E PS+
Sbjct: 14 SEKEDNVERQTKKYNFEID----EPEEQEKKDEKE-DDKEESPSK 53
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 611 VYFSTECVFAPNAYRGHARALLKDMEKIRPSCIMDIIYSGET 486
+ F + + + Y GHA ++ D E SC+ + + ET
Sbjct: 1801 IEFKCDAPYRIHNYTGHAVSVWADFENAADSCVRHLENNEET 1842
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 434 CNFVSSQEVCKACVLLEGLNKGLPKL 357
C + +C +C + E L LPKL
Sbjct: 502 CQIILYSSICTSCSINESLKTKLPKL 527
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 307 VLYSSSNFFTLELLPIPSFGNPLFKPSSKTHALHTSCDDT 426
V+ S+N + LPI + NP + +HTS T
Sbjct: 1195 VVMPSANAYKKRSLPIKATANPALNGAGTWKTIHTSATTT 1234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,824
Number of Sequences: 5004
Number of extensions: 51579
Number of successful extensions: 266
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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