Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12b08
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0597 - 23526705-23526749,23526794-23526905,23527068-235271... 77 1e-14
02_05_0840 - 32118332-32118376,32118420-32118531,32119074-321191... 44 1e-04
02_05_0415 + 28787353-28787496,28787658-28788204,28788297-287883... 33 0.19
09_03_0172 - 13072575-13073800,13075919-13076054 33 0.25
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 31 0.78
07_03_0169 + 14670994-14673714,14673799-14673879,14675460-146756... 31 0.78
07_01_0535 + 3952066-3952986 31 0.78
02_05_0828 + 32057670-32057851,32060054-32060132,32060808-320608... 31 0.78
02_05_0974 - 33218817-33219634,33220733-33221012 31 1.0
04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189 29 3.1
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 29 3.1
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 29 4.1
08_01_0734 + 6729401-6729743,6729997-6730190,6730275-6730461,673... 29 4.1
10_06_0018 - 9674771-9674995,9675079-9675126,9675471-9675530,967... 28 5.5
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 28 5.5
05_06_0203 + 26348360-26348458,26349584-26349645,26349808-263498... 28 5.5
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 28 5.5
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080... 28 5.5
12_02_1201 - 26946817-26947350 28 7.2
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 28 7.2
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 28 7.2
12_02_1204 - 26967352-26967576,26968162-26968371 27 9.6
06_01_1110 - 9137529-9137918,9138011-9138112,9138289-9138381,913... 27 9.6
>01_05_0597 -
23526705-23526749,23526794-23526905,23527068-23527134,
23527439-23527566,23527638-23527750,23527827-23527972,
23528419-23528525,23528667-23528873,23530878-23531129,
23531324-23531406
Length = 419
Score = 77.0 bits (181), Expect = 1e-14
Identities = 33/70 (47%), Positives = 47/70 (67%)
Frame = -1
Query: 593 CVFAPNAYRGHARALLKDMEKIRPSCIMDIIYSGETMSIKEEVSLPTQRLCIRCNFVSSQ 414
C+++PNAYRG AR +KD+E++RP I+DII SGE I +P Q C RC ++SSQ
Sbjct: 346 CIYSPNAYRGFAREFIKDLERMRPRAILDIIKSGENFRISTTTRMPEQGTCERCGYISSQ 405
Query: 413 EVCKACVLLE 384
++ A +L E
Sbjct: 406 DLFLADLLNE 415
>02_05_0840 -
32118332-32118376,32118420-32118531,32119074-32119196,
32119267-32119379,32119460-32119605,32120048-32120162,
32120360-32120473
Length = 255
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = -1
Query: 530 IRPSCIMDIIYSGETMSIKEEVSLPTQRLCIRCNFVSSQEVCKACVLLE 384
I P I+DII SGE I +P Q C RC ++SSQ++ A +L E
Sbjct: 203 IIPRAILDIIKSGENFRISTTTRMPEQGTCERCGYISSQDILLADLLNE 251
>02_05_0415 +
28787353-28787496,28787658-28788204,28788297-28788392,
28788532-28788645,28788929-28789962,28790053-28790124
Length = 668
Score = 33.1 bits (72), Expect = 0.19
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Frame = -1
Query: 359 LGIGKSSKVKKLLDEYNTRQNNLETAVKDLEDCNITDKKTSKTCK-NISNGFKQKECNAT 183
LG GK S +K++ E N ++ + + ++ ++TD KTS+ N E
Sbjct: 333 LGFGKLSALKEITGEMNDKEVDADEVPEEKLPADVTDDKTSEEDDLNEVEKLSAVEIPQA 392
Query: 182 NCCTNKTERNVEKNNEKLQTVLDKYSLENNSQVKLDEEDSDDSEI 48
+ +KT E L V + + EN ++D E S++ ++
Sbjct: 393 DLTGDKT-----SEEEDLNEVKEGSAYENPQADRIDAESSEEDDL 432
>09_03_0172 - 13072575-13073800,13075919-13076054
Length = 453
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 256 ILQSSKSLTAVSKLFCLVLYSSSNFFTLELLPIPSFGNPLFKPSS 390
++ + K LTAV FC L TLE LP P+F K +S
Sbjct: 283 VILTMKDLTAVGGRFCTYLSKEKAIVTLEFLPNPTFTTTPVKDAS 327
>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 31.1 bits (67), Expect = 0.78
Identities = 25/105 (23%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Frame = -1
Query: 320 DEYNTRQNNLETAVKDLEDCNITDKKTSKTCKNISNGFKQKECNATNCCTNKTERNVEKN 141
DE +++LE+ K +EDCNI ++ + + +++ ++ K + ++ K
Sbjct: 770 DELQRLKSSLESCEKAMEDCNIQNELEKDSILSELLTLQKEVVYLSSSSLMKEKESIRKE 829
Query: 140 NEKLQTVL--DKYSLENNSQ--VKLDEEDSD-DSEIKPSR*RRHL 21
++ +T L + L+N+ Q +KL+ E ++ EIK + +R L
Sbjct: 830 LDRTKTKLKETENKLKNSIQEKIKLESEKAEAQREIKKLQSQRTL 874
>07_03_0169 +
14670994-14673714,14673799-14673879,14675460-14675612,
14675910-14676073,14676162-14676309,14676426-14676548,
14676754-14676841,14677493-14677674
Length = 1219
Score = 31.1 bits (67), Expect = 0.78
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Frame = -1
Query: 308 TRQNNLETAVKDLEDCNITDKKT-SKTCKNI---SNGFKQKECNATNCCTNKTERNVEKN 141
T ++NL+ +L D D T K C N ++ F ++ T+ + RNVEKN
Sbjct: 617 TEKSNLDARAINLNDPATVDSVTPEKECANTVQQTSTFSEQLLGEKRSSTDMSTRNVEKN 676
Query: 140 NEKLQTVLDKYSLEN--NSQVKLDEEDSDDSEI 48
+ + K +L + + K+ + +D S +
Sbjct: 677 MHAAENAVAKCNLNDATSDGTKIVNQQADHSAV 709
>07_01_0535 + 3952066-3952986
Length = 306
Score = 31.1 bits (67), Expect = 0.78
Identities = 21/94 (22%), Positives = 37/94 (39%)
Frame = -1
Query: 317 EYNTRQNNLETAVKDLEDCNITDKKTSKTCKNISNGFKQKECNATNCCTNKTERNVEKNN 138
E T + L+ K ++ C DKK CK+ N Q + ++ E+
Sbjct: 111 ERKTPKQYLDEDQKTVQQCQYEDKKVPNQCKDEENTPGQYQDEEQKI----AKQCKEEEE 166
Query: 137 EKLQTVLDKYSLENNSQVKLDEEDSDDSEIKPSR 36
E+ + L+KY E + +K + D P +
Sbjct: 167 EEEENALEKYQDEEHKSLKAQHQCQDTERKAPGQ 200
>02_05_0828 +
32057670-32057851,32060054-32060132,32060808-32060869,
32060993-32061092,32061169-32061210,32062057-32062098,
32062189-32062343,32063609-32063636
Length = 229
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 362 KLGIGKSSKVKKLLDEYNTRQNNLETAVKDLEDCNITDKK 243
KL SS + +++D+YNT NNL A + D N+ K
Sbjct: 53 KLSHFASSSMNEIIDKYNTHSNNLGKAEQPSLDLNLEHSK 92
>02_05_0974 - 33218817-33219634,33220733-33221012
Length = 365
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = -1
Query: 152 VEKNNEKLQTVLDKYSLEN-NSQVKLDEEDSDD-SEIKPSR*RRHLA 18
VE+++E + +++ +++ +S ++L EED DD EIKP+ +R L+
Sbjct: 46 VEEDDEDFEADFEEFEVDSGDSDLELGEEDDDDVVEIKPAAFKRALS 92
>04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189
Length = 470
Score = 29.1 bits (62), Expect = 3.1
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = -1
Query: 332 KKLLDEYNTRQNNLETAVKDLEDCNITDKKTSKTCKNISNGF--KQKECNATNCCTNKTE 159
KKL + +L+ A K+LE + + K C + G + E A T K +
Sbjct: 196 KKLGMALANTEASLQAATKELERERKSKGRVEKICTELIRGIGEDKAEVEALKKETEKAQ 255
Query: 158 RNVEKNNEKLQTVLDKYSLENNSQVKLDE 72
++K E LQ + D++ E Q+KL E
Sbjct: 256 EELQKEREMLQ-LADEWR-EQRVQMKLLE 282
>03_02_0124 -
5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 29.1 bits (62), Expect = 3.1
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = -1
Query: 389 LEGLNKGLPKLGIGKSSKVKKLLDEYNTRQNNLETAVKDLEDCNITDKKTSKTCKNISNG 210
+EG ++G + G+ + K K+ +YN+R+NNL V + + S + N S+
Sbjct: 514 VEGYSRGR-RTGVVEMDKSLKV--DYNSRRNNLAPEVSS-SHITKSSQDESVSSMNSSSH 569
Query: 209 FKQKECNATNCCTNK-TERNVEKNNEKLQTVLDKYSLENNSQV 84
+ K + +N ++ E N NE+L +V + + QV
Sbjct: 570 YSGKAASDSNSVSSSYREDNGFIMNEELPSVSEASDKQQEEQV 612
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 203 QKECNATNCCTNKTERNVEKNNEKLQTVLDKYSLENNSQVKLDEE 69
+KE T E+ E N +K+ + + E N ++KL+EE
Sbjct: 657 EKELKWLRSATGSAEKEYEINQKKIAELKMELERERNERIKLEEE 701
>08_01_0734 +
6729401-6729743,6729997-6730190,6730275-6730461,
6730880-6731073,6731435-6731827,6731913-6731978,
6732061-6732429,6732517-6732568,6733393-6733397
Length = 600
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -1
Query: 272 LEDCNITDKKTSKTCKNISNGFKQKECNATNCCTNKTERNVEKNNEKLQTVLD-KYSLEN 96
+ DC D+ K ++NG + N ++KNN LQ V++ K L N
Sbjct: 228 MHDCERNDELAENGGKRMANGGGNENTTYVNEYERLRAERIKKNNIALQAVIEKKKELAN 287
Query: 95 NSQVKL 78
S+ L
Sbjct: 288 LSEENL 293
>10_06_0018 -
9674771-9674995,9675079-9675126,9675471-9675530,
9675693-9675758,9675844-9675906,9675985-9676032,
9676150-9676215,9676493-9676558,9676660-9676725,
9676822-9676887,9676975-9677058,9677310-9677654,
9677738-9677833,9678129-9678332,9678434-9678726,
9678833-9678958,9679217-9679226
Length = 643
Score = 28.3 bits (60), Expect = 5.5
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Frame = -1
Query: 374 KGLPKLGIGKSSKVKKLLDEYNTRQNNLE------------TAVKDLEDCNITDKKTSKT 231
K LG S K +K+ N R+ NL+ +A K+ E N+T K +
Sbjct: 408 KNTQSLGQNHSGKQRKITSCANKRKGNLDQNELMQPGKSISSAYKNKE--NLTRKLVRPS 465
Query: 230 CKNISNGFKQKECNATNCCTNKTERNVEKNNEKLQTV--LDKYSLENNSQVKLDEED 66
S K+++CN + T+ + V + LQ + +++ ++ NSQ + +ED
Sbjct: 466 LNKYSTASKKRQCNTMDFLTDNSTVKV-YGDGPLQEICHVEQENIVMNSQSHVQDED 521
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -1
Query: 221 ISNGFKQKECNATNCCTNKTERNVEKNNEKLQTVLDKYSLENNSQVKLDEEDS-DDSEIK 45
+ N F + TN + ++ N+E + K S+ N Q+ LD++ S DDS IK
Sbjct: 824 LDNDFNALSAHRTNLESVESGHLFAYNSENGDKIRAKLSVPLNVQISLDDDSSKDDSVIK 883
>05_06_0203 +
26348360-26348458,26349584-26349645,26349808-26349895,
26349985-26350085,26350130-26350223,26350323-26350730,
26351090-26351521,26351612-26351755,26351824-26351940,
26352842-26352949
Length = 550
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = -1
Query: 482 SIKEEVSLPTQRLCIRCNFVSSQEVCKA-----CVLLEGLNK 372
+I+ + LP R CI CN + Q VC + CV G+++
Sbjct: 14 AIRALLKLPGNRRCINCNSLGPQYVCTSFSTFVCVSCSGIHR 55
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 176 CTNKTERNVEKNNEKLQTVLDKYSLENNSQVKLD-EEDSDD 57
C ER E++ +DKYS++ + K+ EEDSDD
Sbjct: 232 CYQDGERVDEQSTSSSNDTMDKYSVQFDDLFKIAWEEDSDD 272
>01_06_1112 +
34606171-34606266,34607170-34607231,34607932-34608019,
34608104-34608165,34608246-34608342,34608499-34608930,
34609042-34610061,34610151-34610282,34610354-34610470,
34610982-34611062,34611321-34611447,34611547-34611592,
34611663-34611708
Length = 801
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 479 IKEEVSLPTQRLCIRCNFVSSQEVC 405
I+ + LP R CI CN V Q VC
Sbjct: 14 IRGLMKLPPNRKCINCNSVGPQYVC 38
>12_02_1201 - 26946817-26947350
Length = 177
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 534 FHILEQGACMSSVSIRCEDTLCREIY*FP 620
+++ +C S V++ C D+ C + Y FP
Sbjct: 128 YNVAMSFSCSSGVTVTCRDSRCPDAYLFP 156
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 27.9 bits (59), Expect = 7.2
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 10/135 (7%)
Frame = -1
Query: 440 IRCNFVSSQEVCKACVLLEGLN-KGLPKLGIGKSSKVKKLLD-EYNTRQNNLETAVKDLE 267
+ C+ ++ C V + LN + P L I K + + +Y N E + E
Sbjct: 98 VSCSKTAADAACS--VYISSLNSEAAPNLIISSERSSKAITEPQYEENGENHEENGEKHE 155
Query: 266 DCNITDKKTSKTCKNISNGFKQKECN---ATNCCTNKT-----ERNVEKNNEKLQTVLDK 111
+ + + C+ NG K + + A N C E EK+NEK + ++
Sbjct: 156 ENGEKQNENGEKCEE--NGGKPAQISDDQAVNGCNGSADKKDKEEETEKDNEKEKEDKEE 213
Query: 110 YSLENNSQVKLDEED 66
+ ++N + K D+E+
Sbjct: 214 ETEKDNEKEKEDKEE 228
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 260 NITDKKTSKTCKN--ISNGFKQKECNATNCCT 171
N+ K + TC N I+ +++CN T CC+
Sbjct: 149 NVPAKLCNVTCPNRGITEDIARQDCNGTGCCS 180
>12_02_1204 - 26967352-26967576,26968162-26968371
Length = 144
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 555 ACMSSVSIRCEDTLCREIY*FP 620
+C S V++ C D+ C + Y FP
Sbjct: 102 SCSSGVTVTCRDSRCPDAYLFP 123
>06_01_1110 -
9137529-9137918,9138011-9138112,9138289-9138381,
9138465-9138719,9139002-9139258,9139341-9139445,
9139555-9139834,9139932-9140212,9140362-9140482
Length = 627
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -1
Query: 380 LNKGLPKLGIGKSSKVKKLLDEYNTRQNNLETAVKDLEDCNI 255
+ +GL ++ K K+ +++ R N+++ A K +CNI
Sbjct: 277 VGRGLERMSRSKKGKLPVVIEPGKMRPNSVKIAAKFATECNI 318
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,225,329
Number of Sequences: 37544
Number of extensions: 295293
Number of successful extensions: 1031
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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