Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12b07
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    27   3.0  
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po...    26   5.3  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   7.0  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   9.3  
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    25   9.3  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   9.3  

>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 140 ATLQNILLR*HNANRNLFIQKHNNTILIKKTLS 238
           +T Q IL    N N N+F   HN T+ +  TL+
Sbjct: 431 STNQIILKNQENINNNMFGSIHNTTLSLNSTLN 463


>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 113 HVA-DFG*NMATLQNILLR*HNANRNLFIQKHNNT 214
           H+A D    +  L N LL  H+A   + I +HNNT
Sbjct: 118 HLAHDIQLKLDELGNALLNDHSAGPQIVISEHNNT 152


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 188 LFIQKHNNTILIKKTLSNLNG 250
           L ++ HN   L+K T SNL+G
Sbjct: 470 LIVKNHNQLSLLKCTFSNLDG 490


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -1

Query: 249 PLRLLKVFFISIVLLCFCINRFLFALCYLSRIFCSVAMFYPKSAT 115
           P R +    I   ++CF      FA  Y    FC V +F P  +T
Sbjct: 455 PFRYIVFNDIQDFIVCFESETIAFAFKYKFFAFCGVPLFPPGIST 499


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 574 YLYVETIIVNFLLFFVTYFYIVN 506
           Y+ + T +  F+L F+ Y+Y+ +
Sbjct: 4   YIVLYTCLAGFILLFLVYYYLTH 26


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 389 YKLILFYSRFESFSSNVIVYSRLTLAREN*LR*RETLHYINYIEICDKKKKKVYND 556
           Y L+    + + F S+   + R+ +   N      T+  I Y+  C K K++VYN+
Sbjct: 708 YSLLTTEDQMKVFDSSPEGH-RMCIVATNVAETSITIPNIRYVVDCGKAKERVYNE 762


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,321
Number of Sequences: 5004
Number of extensions: 36198
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)