Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12b04
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775     35   0.065
06_01_1179 + 10137652-10138038                                         31   1.4  
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771           29   3.2  
01_01_0374 - 2919425-2919529,2919645-2920319                           29   4.3  
12_01_0373 + 2897874-2898911                                           29   5.7  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    28   7.5  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    28   9.9  

>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
          Length = 1123

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
 Frame = -1

Query: 677 TIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEV 498
           T  A+   V   V ES+  AS+ E   D+ +V  K +    +V   +  ES   +S   V
Sbjct: 494 TEAASTEFVTAVVEESAPTASSVETSEDDSTVDDKLVEPTASVSATEA-ESKEDSSEGSV 552

Query: 497 INDEVSVGSKTIVAAP--AVVVNDPIESSTGASATEVINDEALV 372
            + E SV +    +AP  +V +  P   ++ ASA E+I D   V
Sbjct: 553 ASTE-SVTAVVEESAPVSSVAIEVPAPEASEASAQEIIEDSTTV 595


>06_01_1179 + 10137652-10138038
          Length = 128

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +1

Query: 370 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSS-LITSVALAPVEDSITSFT 546
           +  A++ I++ A AP E      + +  AAT    PT  S+      A AP     TS  
Sbjct: 12  ILTAAAAISAAAQAPAESPSPKPSKSTAAATPAKAPTVASAPRKAGPAAAPTTTVATS-- 69

Query: 547 TTAGAATIVLEPTDTSSLITSVALAPVE 630
             AG   + + PT  +++++ VA  P +
Sbjct: 70  APAGGDEVSIPPTPFATVVSPVADGPAD 97


>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
          Length = 372

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = -1

Query: 674 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVI 495
           + A  A +  DV+   +G     V+ND+   G   ++    VVV +      G  A E+ 
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332

Query: 494 NDEV 483
           ++E+
Sbjct: 333 SEEI 336



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -1

Query: 569 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 390
           + A  A +  DV+   +G     V+ND+   G   ++    VVV +      G  A E+ 
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332

Query: 389 NDE 381
           ++E
Sbjct: 333 SEE 335


>01_01_0374 - 2919425-2919529,2919645-2920319
          Length = 259

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 701 DEVSGXSKTIVAAPAVVVNDVIESSTG---ASATEVINDEVSVGSKTIVAAPAVVV 543
           D+VSG    +V +PA    +   S  G      T  + D+++V   + V+A A +V
Sbjct: 149 DDVSGAGAKVVTSPAAPSGEASSSKAGYAPGKVTYTVMDDLTVAPSSTVSAVAALV 204


>12_01_0373 + 2897874-2898911
          Length = 345

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +1

Query: 388 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 564
           L+ ++A  P   S  + TTT  AAT     T  S+  TS       +  TS T  A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 278 YSNLVALRYLKLLVQPQPRLL*WFLL 355
           Y+N  AL+YL      +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572


>09_02_0393 +
           8510089-8510274,8510450-8510806,8510889-8511011,
           8511209-8511523,8511576-8511682,8512559-8512629,
           8512952-8513029,8513390-8513454,8514224-8514274,
           8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 581 GSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVN 435
           G K+ + +PA+     + S+   S T+ +N+EV+   +T+    AV+V+
Sbjct: 478 GMKSRILSPALPQQSYLSSAELPSLTDHVNEEVAKLDRTVRRITAVLVD 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,220,412
Number of Sequences: 37544
Number of extensions: 249199
Number of successful extensions: 670
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)