Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12b03
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    29   0.57 
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   1.7  
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.0  

>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 521 LIFNFTPCIYVLCISRPRKQRFGYGFSKITQVRMYSFFILI*FYCIYA 378
           L+++F   I V C+  P+   +    +   Q  +YS F+ +  YCI+A
Sbjct: 134 LVYDFIAGITVGCVVVPQGMSYAKVATLPAQYGLYSSFVGVAIYCIFA 181


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 359 GAMSSYTHICNKIILE*KNYTYVLE*FLKNHIQTFASLA 475
           G + +++ + N I +      +VLE FL NH+Q + S++
Sbjct: 328 GTLETFSLLDNSISMLDSPERHVLEKFLNNHLQNYGSVS 366


>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 126

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 344 NHLIPGAMSSYTHICNKI-ILE*KNYTYV 427
           N L    ++SY H+C KI  LE  N  YV
Sbjct: 95  NKLYENVLASYKHLCEKIKYLEADNPLYV 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,637
Number of Sequences: 5004
Number of extensions: 55148
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)