Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12b02
(520 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1566 + 27766336-27766393,27766480-27766609,27766728-277667... 29 1.7
06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540... 28 5.2
07_01_0622 - 4625246-4627759 27 6.8
12_01_1062 - 10966940-10967140,10967314-10967413,10968069-109681... 27 9.0
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 27 9.0
05_07_0076 - 27520152-27520379,27520785-27521096,27521194-275213... 27 9.0
04_03_0201 - 12586324-12587131,12590080-12591512 27 9.0
>07_03_1566 +
27766336-27766393,27766480-27766609,27766728-27766797,
27767134-27767196,27767741-27767815,27768035-27768154,
27768508-27768549,27768651-27768725,27768909-27769055,
27769165-27769302,27769448-27769562,27769658-27769746,
27770062-27770184
Length = 414
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = -1
Query: 376 ENNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYI 197
E F TE+ + L NP +A + VD+ R Y+ PAKY L ++
Sbjct: 159 ERRTFLFSATMTEKVKKLRRACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHV 218
Query: 196 YNR-EYSKALTLSRTLETS 143
N+ S + RT E++
Sbjct: 219 LNKMPGSMIMVFVRTCEST 237
>06_01_0733 +
5405889-5405922,5405923-5405975,5406430-5406543,
5407464-5407523,5408139-5408217,5410661-5410728,
5411198-5411302,5411887-5411994,5412087-5412279,
5412818-5412897,5413309-5413536,5414112-5414252,
5414341-5414466,5414561-5414611,5414879-5414956,
5415814-5415960,5416685-5417179
Length = 719
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 8 NISLLLILVGFREYLKYNLKCLNTPSVMFGTSDHSTIV 121
N+ L+ VG RE+ +L TP V TSDH I+
Sbjct: 349 NVPANLLCVGHREFPSDSLPVQETPLVSRKTSDHVDIL 386
>07_01_0622 - 4625246-4627759
Length = 837
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 102 PITLPLYPQAMRLPEVSSVLDSVKALLY 185
P+TLPLYPQ+M + S+ D +A L+
Sbjct: 398 PVTLPLYPQSME--DASTQSDCEEACLH 423
>12_01_1062 -
10966940-10967140,10967314-10967413,10968069-10968132,
10968301-10968373,10968467-10968612,10969625-10969667,
10969712-10969902,10970706-10970892,10971225-10971384,
10971483-10971616,10972525-10972530
Length = 434
Score = 27.1 bits (57), Expect = 9.0
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +2
Query: 230 GLQVPLGSETIDAVDSEGHVVAVRVSTDSQYQILVTLSVQDLEVDLVVLP--QSNELPAD 403
G+ V L ++ DA +S VA V+ + +I+ T + + ++LV SN D
Sbjct: 42 GIHV-LSAKATDAYESARTKVANFVNAANSREIVFTRNATEA-INLVAYSWGMSNLKQGD 99
Query: 404 FRACFVLTVAEGKSAIVAVNIITQRQSETVALV 502
VLT+AE SAIV ++Q+ T+ V
Sbjct: 100 E---IVLTIAEHHSAIVPWQFVSQKTGATLKYV 129
>06_03_1457 -
30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = -1
Query: 514 IKLMYKRDGLALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVYFKILNTE 338
I+L+ + G + S+D LA +G D PKV K IAL E N ++ TE
Sbjct: 365 IRLVVDKSGQSFLSSDDRDDGSSLLAKSEGLDL--PKVGQKRIALDEENSFPKRLKMTE 421
>05_07_0076 -
27520152-27520379,27520785-27521096,27521194-27521333,
27521893-27521956,27522071-27522277,27522350-27522493,
27522578-27522709,27522880-27524294,27524647-27524920,
27526096-27526129,27527028-27527059
Length = 993
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 302 VSTDSQYQILVTLSVQDLEVDLVVLPQSNELPADF 406
V+ DSQYQI+ T +Q D+ Q+ EL F
Sbjct: 678 VNADSQYQIVTTAELQPSAEDISEEKQTMELITQF 712
>04_03_0201 - 12586324-12587131,12590080-12591512
Length = 746
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 310 GTNPNGDHMAFGVNSVDSFRAQWYLQP 230
G +P+G H+ +N+VDS R + + P
Sbjct: 182 GWDPSGRHVGVDINNVDSRRGNYVVLP 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,832,106
Number of Sequences: 37544
Number of extensions: 254775
Number of successful extensions: 733
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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