Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12b02
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    27   8.0  

>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
           protein C44H9.4 protein.
          Length = 1099

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 367 KVYFKILNTERNQYLVLGVGTNPNGDH 287
           + YF++L+ E N+Y+++    N +G H
Sbjct: 156 RAYFRVLSAEDNKYILIACHANLHGLH 182


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 190 REYSKALTLSRTLETSGNRMAWGYNGRVIGSPEHYAWGVK 71
           R+YS+ + L R  +T G R +W        SP+H+ +GVK
Sbjct: 18  RDYSRQVQLERQADTEGRRSSW--------SPKHW-FGVK 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,924,023
Number of Sequences: 27780
Number of extensions: 221008
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)