Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12b01
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600...    27   10.0 

>03_05_1124 +
           30559633-30559674,30559781-30559890,30559973-30560030,
           30560455-30560718,30560803-30560940,30561264-30561315,
           30561525-30561604,30561929-30561988,30562084-30562164,
           30562299-30562376,30563548-30563676,30563896-30564039,
           30564145-30564290,30564402-30564558,30564657-30564715,
           30564800-30564959,30565054-30565203,30565309-30565445,
           30565531-30565677,30565995-30566052,30566417-30566518,
           30566590-30566627,30566846-30566972,30567053-30567223,
           30567313-30567444,30567575-30567681,30567815-30567875,
           30567970-30568147,30568245-30568450,30568781-30568879,
           30569021-30569236,30569333-30569472,30569559-30569660,
           30569747-30569861,30570129-30570194,30570323-30570480,
           30570594-30570690,30570931-30571137,30571435-30571505,
           30571648-30571747,30571836-30571892,30571969-30572025,
           30572108-30572188,30572319-30572401,30572504-30572651
          Length = 1722

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 480 HIIKCRFGINQIYT 521
           H + CR+GIN+IYT
Sbjct: 400 HNLACRYGINEIYT 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,041,475
Number of Sequences: 37544
Number of extensions: 99089
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)