Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12b01
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81453-4|CAB03794.1|  283|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.10 protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 492 CRFGINQIYTE*IIILKLF 548
           CRFG++ +YT  I+ILK++
Sbjct: 47  CRFGVDLVYTVVILILKIY 65


>Z81453-4|CAB03794.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.6 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 492 CRFGINQIYTE*IIILKLF 548
           CRFG++ +YT  ++ILK++
Sbjct: 47  CRFGVDLVYTIVLLILKIY 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,967,103
Number of Sequences: 27780
Number of extensions: 112171
Number of successful extensions: 219
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)