Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12a24
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S... 116 3e-27
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 27 2.7
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 27 2.7
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 27 2.7
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 3.6
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 26 3.6
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.7
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 25 6.2
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.3
>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 116 bits (279), Expect = 3e-27
Identities = 54/151 (35%), Positives = 97/151 (64%)
Frame = -2
Query: 589 GLTPHLIVLGGHFLFPFFRDLILSLGTCASSQESLLYLLNPKRFQGNCVAIMVGGAAEAL 410
G+ ++ L +F P +RD +++L + S++S + +L+ K G+ V I++GGA E+L
Sbjct: 145 GINVSVLTLNSNFYVPVYRDYLMALNINSVSKKSCVSILSRK--PGDSVLIVIGGAQESL 202
Query: 409 DSHPGKYKIILSRRKGFIRIAMKSGASLVPVFSFGETDVFRPLNNPENSLLRRIQEKVRQ 230
S PG+ ++L +R GF+++A +G+SLVP F+FGE+D+F ++N + + + QE V++
Sbjct: 203 LSRPGQNNLVLKKRFGFVKLAFLTGSSLVPCFAFGESDIFEQVDNNPRTRIYKFQEIVKK 262
Query: 229 ITGVSPVFPLGRGMFQYSFGVVPLRSPVTTV 137
I G + F GRG+ +FG++P R P+ V
Sbjct: 263 IAGFTVPFFYGRGLLNKTFGLMPWRKPINIV 293
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 331 SLVPVFSFGETDVFRPLNNPENSLLRRIQEKVRQITGVSPVF 206
S++PV+ +TD P+NN +L ITG++P++
Sbjct: 47 SIIPVYGAEKTDTLDPINN--FRVLDGSSASGLMITGLAPIY 86
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = -3
Query: 330 PLYPFFRLVKL-TFSDLSITPRTAC*GGYKKKCVR*LEFHQSSLLGGACSSIRSGLYLSG 154
P Y R+ L T S S P C +KK + LGG C R G YL+
Sbjct: 427 PQYVMLRMADLLTVSSCSTAPHLTCSADAQKK--------ECQALGGTCLYKRDGYYLTS 478
Query: 153 V 151
+
Sbjct: 479 I 479
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 239 SASDNWSFTSLPSWEGHVPVFVRGCTSQESRYNCWDVV 126
S S NWS SL S EG V F R +Q++ D+V
Sbjct: 246 SISANWSTLSLLSTEGCVYAFGRCDRAQKAHTKASDIV 283
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 149 GTPERYNPERILEHAPPKREDW*NSSYLTHFFL--YPPQQA 265
GTP+ PE IL + K DW + + FL YPP A
Sbjct: 859 GTPDYIAPEVILGNPGIKASDWWSLGCVVFEFLFGYPPFNA 899
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 137 NSCNGTPERYNPERILEHAPPKREDW 214
N+ GTPE PE +L H K DW
Sbjct: 386 NTFCGTPEYLAPELLLGHGYTKVVDW 411
>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 190
Score = 25.8 bits (54), Expect = 4.7
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 319 VFSFGETDVFRPLNNPENSLLRRIQEKVR-QITGVSPV-FPLGRGMFQYSFGVVPLRSPV 146
+F+F + + P N PE LR ++E V + P+ P G F S+ VPLR +
Sbjct: 79 IFTFKKNVLILPANVPEGIELRILEENVSLPLKEFEPIKVPAGAHCF-LSWEKVPLRKRI 137
Query: 145 TTV 137
+
Sbjct: 138 KII 140
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 502 SSQESLLYLLNPKRFQ 455
S + LLY++NPK+FQ
Sbjct: 536 SRKRMLLYIMNPKKFQ 551
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -2
Query: 349 AMKSGASLVPVFSFGETDVFRPLNNPENSLLRR 251
A+ S + VP+ S + P+ P+NS++ +
Sbjct: 577 AISSSSEFVPIESHPSSSAVVPIEEPKNSIIEK 609
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,165
Number of Sequences: 5004
Number of extensions: 52877
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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