Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12a24
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0507 - 29617998-29618099,29618299-29618386,29618470-296185... 54 6e-08
06_02_0178 + 12652654-12652877,12652964-12653140,12653141-126532... 51 8e-07
09_04_0689 - 19480409-19480599,19480780-19480889,19481032-194811... 42 5e-04
01_03_0292 - 14738016-14738316,14738570-14738655,14739002-147391... 34 0.074
12_01_0497 + 3946179-3946322,3947274-3947342,3948733-3948829,395... 33 0.13
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265... 31 0.69
01_03_0288 - 14714953-14715253,14716317-14716402,14716573-147166... 31 0.69
11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142 28 6.4
02_05_0998 + 33391021-33391266,33391354-33391502,33391600-333916... 28 6.4
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 27 8.5
>02_05_0507 -
29617998-29618099,29618299-29618386,29618470-29618567,
29618680-29618766,29618887-29619042,29619228-29619334,
29619621-29619706,29619796-29619870,29619987-29620204
Length = 338
Score = 54.4 bits (125), Expect = 6e-08
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Frame = -2
Query: 580 PHLIVLGGHFLF--PFFRDLILSLGTCASSQESLLYLLNPKRFQGNCVAIMVGGAAEALD 407
P + VL +F PF R + LG +S+++ L G I+ GG E L
Sbjct: 153 PKIKVLASSAVFYTPFLRQIWTWLGLVPASRKNFYSYLKA----GYSCVIVPGGVQEMLH 208
Query: 406 SHPGKYKIILSRRKGFIRIAMKSGASLVPVFSFGETDVFR 287
L RKGF++IAM++G+ LVPVF+FG++ V++
Sbjct: 209 MDHDSEVAFLKSRKGFVKIAMETGSPLVPVFAFGQSYVYK 248
>06_02_0178 +
12652654-12652877,12652964-12653140,12653141-12653214,
12653424-12653530,12653637-12653792,12653933-12654019,
12654247-12654344,12654467-12654554,12654810-12654911
Length = 370
Score = 50.8 bits (116), Expect = 8e-07
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Frame = -2
Query: 580 PHLIVLGGHFLF--PFFRDLILSLGTCASSQESLLYLLNPKRFQGNCVAIMVGGAAEALD 407
P + VL +F PF R + LG +++++ L G I+ GG E L
Sbjct: 185 PKIKVLASSAVFYTPFLRQIWTWLGLIPATRKNFQSYLGA----GYSCIIVPGGVQEILH 240
Query: 406 SHPGKYKIILSRRKGFIRIAMKSGASLVPVFSFGETDVFRPLNNPENSLLRRIQEKVR 233
L RKGF++IAM+SG LVPVF FG++ ++ P+ L +I ++
Sbjct: 241 MDHDSEIAFLKSRKGFVKIAMQSGCPLVPVFCFGQSYAYK-WWRPKGKLFVKIARAIK 297
>09_04_0689 -
19480409-19480599,19480780-19480889,19481032-19481117,
19481410-19481523,19481697-19482066,19482216-19482346,
19482628-19482736,19482901-19483022,19483113-19483219,
19483447-19483551,19483654-19483812,19484071-19484126,
19484200-19484251,19486724-19486821,19487086-19487210
Length = 644
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/84 (29%), Positives = 41/84 (48%)
Frame = -2
Query: 544 PFFRDLILSLGTCASSQESLLYLLNPKRFQGNCVAIMVGGAAEALDSHPGKYKIILSRRK 365
P + D+ +G + + LL K F V + GGA EAL +YK+ +
Sbjct: 435 PSYYDMHRIMGAVPVTAGNFYKLLAEKHF----VLLYPGGAREALHRKGEEYKLFWPEQS 490
Query: 364 GFIRIAMKSGASLVPVFSFGETDV 293
F+R+A + GA+++P GE D+
Sbjct: 491 EFVRMASRFGATIIPFGVVGEDDI 514
>01_03_0292 -
14738016-14738316,14738570-14738655,14739002-14739115,
14739299-14739668,14739769-14739977,14740037-14740145,
14740257-14740378,14740873-14740979,14741393-14741447
Length = 490
Score = 34.3 bits (75), Expect = 0.074
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -2
Query: 445 VAIMVGGAAEALDSHPGKYKIILSRRKGFIRIAMKSGASLVPVFSFGETDV 293
V + GG EAL YK+ + F+R+A + G +++P GE DV
Sbjct: 310 VLLYPGGVREALHRKGEAYKLFWPDQPEFVRMAARFGVTIIPFGFVGEDDV 360
>12_01_0497 +
3946179-3946322,3947274-3947342,3948733-3948829,
3951827-3952033,3952149-3952264,3953189-3953293,
3953380-3953552,3953647-3953737,3953869-3954018,
3954482-3954724
Length = 464
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -2
Query: 529 LILSLGTCASSQESLLYLLNPKRFQGNCVAIMVGGAAEALDSHPGKYKIILSRRKGFI-R 353
++L A + SLL L P+ G+C+ ++ GG AE K+ I G + R
Sbjct: 120 VVLKPSEVAPATSSLLAELLPRYVDGSCIKVVEGGVAETTTLLEQKWDKIFYTGNGKVGR 179
Query: 352 IAMKSGAS-LVPV 317
I M S A L PV
Sbjct: 180 IVMASAAKHLTPV 192
>01_03_0289 -
14725832-14726114,14726216-14726298,14726432-14726545,
14727830-14728199,14728726-14728856,14728970-14729078,
14729257-14729378,14729522-14729625,14729849-14729953,
14730034-14730192,14730336-14730391,14730576-14730627,
14730725-14731031
Length = 664
Score = 31.1 bits (67), Expect = 0.69
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -2
Query: 454 GNCVAIMVGGAAEALDSHPGKYKIILSRRKGFIRIAMKSGASLVPVFSFGETDVFRPL 281
G V + GG EAL ++++ + F+R+A + A++VP GE D+ L
Sbjct: 488 GEFVLLYPGGHREALHCKGEEHRLFWPDQTEFVRMAAQFNATIVPFGVVGEDDLMELL 545
>01_03_0288 -
14714953-14715253,14716317-14716402,14716573-14716686,
14716771-14717140,14717224-14717357,14717512-14717617,
14717733-14717854,14718125-14718231,14718522-14718622,
14719007-14719169,14719559-14719614,14720833-14721152
Length = 659
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 445 VAIMVGGAAEALDSHPGKYKIILSRRKGFIRIAMKSGASLVPVFSFGETDV 293
V + GG EAL Y++ + F+R+A + G +++P GE D+
Sbjct: 479 VLLYPGGIREALHRKDEDYQLFWPDQPEFVRMAAQFGVTVIPFGCVGEDDM 529
>11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142
Length = 751
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -3
Query: 198 GGACSSIRSGLYLS--GVPLQLLGCGIGYKSVAE 103
GGACS++ G YLS G+ L + GIG +V +
Sbjct: 176 GGACSTVGVGGYLSGGGIGLMMRKFGIGADNVLD 209
>02_05_0998 +
33391021-33391266,33391354-33391502,33391600-33391681,
33391808-33392223,33393659-33393854,33393932-33394074,
33394153-33394327,33394450-33394503,33394701-33394877,
33395832-33395944,33396083-33396265,33396570-33396632,
33396742-33396894,33396922-33396994,33397076-33397206,
33397285-33397420,33397504-33397581,33398146-33398262,
33398473-33398535,33398619-33398720
Length = 949
Score = 27.9 bits (59), Expect = 6.4
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Frame = +1
Query: 76 SDY*LTACHLCNAFIADTTSQQL*RDS*EVQPRTNTGTCPSQEGR--LVKLQLSDAL-FL 246
SD C C++ T L D ++ ++ P G ++ ++LS L L
Sbjct: 161 SDSFKLGCSACSSNRTPTVGDALVFDPPSLRENSDASPAPCCTGNSTIIHVELSVKLRLL 220
Query: 247 VSSSAGCSRGY*EVGKRQFHQTKK-RVQGTLLT 342
V+ +GC G VGK+ QT RV+ L T
Sbjct: 221 VALYSGCQIGLCAVGKKGLKQTSSIRVERWLNT 253
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 551 PVPVLQGFNSFLRNLCIVTGELALPTE 471
P+ V+ ++SF NLC GEL L E
Sbjct: 83 PIIVIDNYDSFTYNLCQYMGELGLNFE 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,303,358
Number of Sequences: 37544
Number of extensions: 354544
Number of successful extensions: 941
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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