Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a24
         (590 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069178-1|AAL39323.1|  352|Drosophila melanogaster GH22719p pro...   155   6e-38
AE013599-487|AAF59201.1|  352|Drosophila melanogaster CG1942-PA ...   155   6e-38
AY075443-1|AAL68256.1|  352|Drosophila melanogaster RE04845p pro...   154   7e-38
AE013599-486|AAF59202.1|  352|Drosophila melanogaster CG1941-PA ...   154   7e-38
BT022263-1|AAY54679.1|  268|Drosophila melanogaster IP08159p pro...   146   1e-35
AE013599-488|AAF59200.1|  226|Drosophila melanogaster CG1946-PA ...   146   1e-35
AE014297-3011|AAF55897.2| 1489|Drosophila melanogaster CG7922-PA...    32   0.51 

>AY069178-1|AAL39323.1|  352|Drosophila melanogaster GH22719p
           protein.
          Length = 352

 Score =  155 bits (375), Expect = 6e-38
 Identities = 76/158 (48%), Positives = 107/158 (67%), Gaps = 10/158 (6%)
 Frame = -2

Query: 580 PHLIVLGGHFLFPFFRDLILSLGTCASSQESLLYLLN----PKR------FQGNCVAIMV 431
           P L  L  HF  PF R+++   G  + S+E+L+ +L+    PK       F  N VAI+V
Sbjct: 143 PKLGTLDQHFHVPFMREVLRCWGLVSVSKEALIRMLSKSNDPKHKDNRDGFTSNAVAILV 202

Query: 430 GGAAEALDSHPGKYKIILSRRKGFIRIAMKSGASLVPVFSFGETDVFRPLNNPENSLLRR 251
           GGA EA+DSHPG+Y + L  RKGF+R+A+++G+S+VP FSFGE D+F  + NP NSLLRR
Sbjct: 203 GGAQEAMDSHPGQYILTLKNRKGFVRMAIRTGSSIVPSFSFGEVDIFDQVANPPNSLLRR 262

Query: 250 IQEKVRQITGVSPVFPLGRGMFQYSFGVVPLRSPVTTV 137
            Q+ V+++TGVSP+ P+GRG F Y+FG +P R  +  V
Sbjct: 263 FQDFVKKLTGVSPLIPVGRGFFNYTFGFLPFRRRIVQV 300


>AE013599-487|AAF59201.1|  352|Drosophila melanogaster CG1942-PA
           protein.
          Length = 352

 Score =  155 bits (375), Expect = 6e-38
 Identities = 76/158 (48%), Positives = 107/158 (67%), Gaps = 10/158 (6%)
 Frame = -2

Query: 580 PHLIVLGGHFLFPFFRDLILSLGTCASSQESLLYLLN----PKR------FQGNCVAIMV 431
           P L  L  HF  PF R+++   G  + S+E+L+ +L+    PK       F  N VAI+V
Sbjct: 143 PKLGTLDQHFHVPFMREVLRCWGLVSVSKEALIRMLSKSNDPKHKDNRDGFTSNAVAILV 202

Query: 430 GGAAEALDSHPGKYKIILSRRKGFIRIAMKSGASLVPVFSFGETDVFRPLNNPENSLLRR 251
           GGA EA+DSHPG+Y + L  RKGF+R+A+++G+S+VP FSFGE D+F  + NP NSLLRR
Sbjct: 203 GGAQEAMDSHPGQYILTLKNRKGFVRMAIRTGSSIVPSFSFGEVDIFDQVANPPNSLLRR 262

Query: 250 IQEKVRQITGVSPVFPLGRGMFQYSFGVVPLRSPVTTV 137
            Q+ V+++TGVSP+ P+GRG F Y+FG +P R  +  V
Sbjct: 263 FQDFVKKLTGVSPLIPVGRGFFNYTFGFLPFRRRIVQV 300


>AY075443-1|AAL68256.1|  352|Drosophila melanogaster RE04845p
           protein.
          Length = 352

 Score =  154 bits (374), Expect = 7e-38
 Identities = 77/158 (48%), Positives = 107/158 (67%), Gaps = 10/158 (6%)
 Frame = -2

Query: 580 PHLIVLGGHFLFPFFRDLILSLGTCASSQESLLYLL----NPKR------FQGNCVAIMV 431
           P +  L  +FL P  R L+ S G  + S+E+L+YLL    +PK       F  N VAI+V
Sbjct: 143 PKVATLDQNFLTPIVRGLLRSWGLVSVSKEALVYLLTKSNDPKHKDNRDGFTSNAVAILV 202

Query: 430 GGAAEALDSHPGKYKIILSRRKGFIRIAMKSGASLVPVFSFGETDVFRPLNNPENSLLRR 251
           GGA EALDSHPGKY + L  RKGF+++A+++G+S+VP FSFGE D+   + NP NS +RR
Sbjct: 203 GGAQEALDSHPGKYILTLKNRKGFVKMAIRTGSSIVPTFSFGEVDILDQVANPPNSRVRR 262

Query: 250 IQEKVRQITGVSPVFPLGRGMFQYSFGVVPLRSPVTTV 137
            Q+ V++ITG+SP+ P+GRG+F YSFG +P R  +  V
Sbjct: 263 FQDFVKRITGISPLIPVGRGIFNYSFGFLPNRRRIVQV 300


>AE013599-486|AAF59202.1|  352|Drosophila melanogaster CG1941-PA
           protein.
          Length = 352

 Score =  154 bits (374), Expect = 7e-38
 Identities = 77/158 (48%), Positives = 107/158 (67%), Gaps = 10/158 (6%)
 Frame = -2

Query: 580 PHLIVLGGHFLFPFFRDLILSLGTCASSQESLLYLL----NPKR------FQGNCVAIMV 431
           P +  L  +FL P  R L+ S G  + S+E+L+YLL    +PK       F  N VAI+V
Sbjct: 143 PKVATLDQNFLTPIVRGLLRSWGLVSVSKEALVYLLTKSNDPKHKDNRDGFTSNAVAILV 202

Query: 430 GGAAEALDSHPGKYKIILSRRKGFIRIAMKSGASLVPVFSFGETDVFRPLNNPENSLLRR 251
           GGA EALDSHPGKY + L  RKGF+++A+++G+S+VP FSFGE D+   + NP NS +RR
Sbjct: 203 GGAQEALDSHPGKYILTLKNRKGFVKMAIRTGSSIVPTFSFGEVDILDQVANPPNSRVRR 262

Query: 250 IQEKVRQITGVSPVFPLGRGMFQYSFGVVPLRSPVTTV 137
            Q+ V++ITG+SP+ P+GRG+F YSFG +P R  +  V
Sbjct: 263 FQDFVKRITGISPLIPVGRGIFNYSFGFLPNRRRIVQV 300


>BT022263-1|AAY54679.1|  268|Drosophila melanogaster IP08159p
           protein.
          Length = 268

 Score =  146 bits (355), Expect = 1e-35
 Identities = 71/158 (44%), Positives = 102/158 (64%), Gaps = 10/158 (6%)
 Frame = -2

Query: 580 PHLIVLGGHFLFPFFRDLILSLGTCASSQESLLYLL----------NPKRFQGNCVAIMV 431
           P +  L  HF  PF RD++   G  + S+ESL YLL          N   F  N VA++V
Sbjct: 59  PKIATLDHHFKTPFLRDILRWWGMVSVSKESLSYLLSKSNDPMHKDNRDGFTSNAVAVLV 118

Query: 430 GGAAEALDSHPGKYKIILSRRKGFIRIAMKSGASLVPVFSFGETDVFRPLNNPENSLLRR 251
           GGA EA+DSHPG+Y + L  RKGF+++A+++G+S+VP  SFGE D+F  + NP +S LRR
Sbjct: 119 GGAKEAMDSHPGQYILTLKDRKGFVKMAVRTGSSIVPSLSFGEVDIFDQVANPPDSSLRR 178

Query: 250 IQEKVRQITGVSPVFPLGRGMFQYSFGVVPLRSPVTTV 137
            Q  V++ TG+SP+ P GRG+F Y++G++P R  +  V
Sbjct: 179 FQNVVKKFTGISPLLPKGRGIFNYNYGILPHRRRIVQV 216


>AE013599-488|AAF59200.1|  226|Drosophila melanogaster CG1946-PA
           protein.
          Length = 226

 Score =  146 bits (355), Expect = 1e-35
 Identities = 71/158 (44%), Positives = 102/158 (64%), Gaps = 10/158 (6%)
 Frame = -2

Query: 580 PHLIVLGGHFLFPFFRDLILSLGTCASSQESLLYLL----------NPKRFQGNCVAIMV 431
           P +  L  HF  PF RD++   G  + S+ESL YLL          N   F  N VA++V
Sbjct: 17  PKIATLDHHFKTPFLRDILRWWGMVSVSKESLSYLLSKSNDPMHKDNRDGFTSNAVAVLV 76

Query: 430 GGAAEALDSHPGKYKIILSRRKGFIRIAMKSGASLVPVFSFGETDVFRPLNNPENSLLRR 251
           GGA EA+DSHPG+Y + L  RKGF+++A+++G+S+VP  SFGE D+F  + NP +S LRR
Sbjct: 77  GGAKEAMDSHPGQYILTLKDRKGFVKMAVRTGSSIVPSLSFGEVDIFDQVANPPDSSLRR 136

Query: 250 IQEKVRQITGVSPVFPLGRGMFQYSFGVVPLRSPVTTV 137
            Q  V++ TG+SP+ P GRG+F Y++G++P R  +  V
Sbjct: 137 FQNVVKKFTGISPLLPKGRGIFNYNYGILPHRRRIVQV 174


>AE014297-3011|AAF55897.2| 1489|Drosophila melanogaster CG7922-PA
           protein.
          Length = 1489

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -3

Query: 420 LRRLTRILESTKSFSADERDLFASL*SQERP 328
           LR+LTR+L+S+K F +D +DL + L     P
Sbjct: 700 LRKLTRLLQSSKPFVSDSKDLMSHLQDDHLP 730


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,536,520
Number of Sequences: 53049
Number of extensions: 598743
Number of successful extensions: 1519
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)