Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a22
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    30   1.8  
Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 664 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 488
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 664 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 488
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical
           protein F44F1.3 protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 503 VHKLNGVFGEDKSELNWETITDDVLGA-LEP 592
           VHK+NG+F ++K  +  E I D      LEP
Sbjct: 419 VHKINGIFSDNKKVVACEIINDSTQDIDLEP 449


>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
           protein C44H9.4 protein.
          Length = 1099

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 370 KVYFKILNTERNQYLVLGVGTNPNGDH 290
           + YF++L+ E N+Y+++    N +G H
Sbjct: 156 RAYFRVLSAEDNKYILIACHANLHGLH 182


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -1

Query: 616 CMEYAYQLWL---QGSKDIVRDCFPVEFRLIFA 527
           C+ Y Y+L +     +KD+ RDCF   F + FA
Sbjct: 139 CLFYVYRLTIVIYMTAKDVARDCFYSFFPITFA 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,565,109
Number of Sequences: 27780
Number of extensions: 298797
Number of successful extensions: 904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)