Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a21
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    30   0.25 
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    27   2.3  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   4.0  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.3  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   7.0  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.0  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   7.0  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   9.3  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   9.3  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   9.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   9.3  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 23/96 (23%), Positives = 39/96 (40%)
 Frame = -1

Query: 351 KAPSSYTTTTVKPELNKELTTKPDQKLTTKYFTTETSVTQGHTTAKMAAAVAKPPENHVV 172
           K+P S T   V P  +KE  T   + +         + +Q   + + +AA A     +V+
Sbjct: 566 KSPLSLTPKVVVPS-HKETYTDEKKLIDELDRVNPLNSSQLLRSKRKSAATALSMLQNVI 624

Query: 171 TPDATSVEAKPDKIKAHRSIQEKETPDYLKSGANIN 64
            PD  + E +  + + HRS+   E         N N
Sbjct: 625 MPDVLAFEREKKRRQTHRSVSSGEVSRESSESRNTN 660


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 342 SSYTTTTVKPELNKELTTKPDQKLTTKYF--TTETSVTQ 232
           ++Y T+T  P  N  L T+  +K T +YF  T E+   Q
Sbjct: 164 AAYNTSTGLPRSNVNLGTRKSRKRTREYFVSTAESGTVQ 202


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 369 PTAADIKAPSSYTTTTVKPELNKELTTKPDQKLTT 265
           P    +K P  YT  T KP+L K    K D  + +
Sbjct: 249 PVITSLKKPDEYTKITFKPDLAKFGMDKIDDDMVS 283


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
 Frame = -1

Query: 603 KCQPDAALREAWSKTEEIEKNXXXXXXXXXXXXQNPEYEYYDN--TQLDGKF-FYVDVRD 433
           +C PD  +   W    E+  N             NPE E   N      G + F V+ +D
Sbjct: 11  RCTPDGVIEMLWMYQSELMGNKQPILNKDEMAANNPELEALKNQIALFHGMYGFSVETKD 70

Query: 432 LL 427
           +L
Sbjct: 71  IL 72


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 357 DIKAPSSYTTTTVKPELNKELTTKPDQKLTTKYFTTETSVTQG--HTTAKMAAA 202
           D K+PS+ +   +KP  +K  TTK D +   +     +S T+    TT+K ++A
Sbjct: 132 DTKSPSNASVFPIKPTESKTSTTK-DSETAKEEDDASSSTTKAVEATTSKASSA 184


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 380 PEKVQ-PLLTSKHRVLTPPRL*NRS*IKNSQRNLIKN*QRN 261
           PEK + PL++SK   +T  R  N S   NS  N  KN Q+N
Sbjct: 70  PEKHKIPLISSKQFSVTSKRSQNGSSGSNSDANGRKNGQKN 110


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 342 SSYTTTTVKPELNKELTTKPDQKLTTKYFTTETS 241
           +SYT + V P +N +    P+Q   + + TT+ S
Sbjct: 159 ASYTNSPVTPPINDKNILLPEQSPLSNFSTTKIS 192


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 24/81 (29%), Positives = 34/81 (41%)
 Frame = -1

Query: 354 IKAPSSYTTTTVKPELNKELTTKPDQKLTTKYFTTETSVTQGHTTAKMAAAVAKPPENHV 175
           +K  S ++ TT+KPE     TT P  +   +    E       TT  +A+A     EN+ 
Sbjct: 577 LKEISQFSKTTIKPETPLTPTTTPTPRTAAQEDPAE------ETTDALASAEG---ENNQ 627

Query: 174 VTPDATSVEAKPDKIKAHRSI 112
           + P     EA P      RSI
Sbjct: 628 M-PQVLETEAAPSIASEGRSI 647


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 171 TPDATSVEAKPDKIKAHRSIQEKETPDYLKS 79
           TPD    E K +++     ++ +ETP +LK+
Sbjct: 328 TPDFDGNEVKSEELSQTVKVESQETPVHLKA 358


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 102 ETPDYLKSGANINLGCVMLLTVILYL 25
           E P+  K   N+NLGCV  LT +  L
Sbjct: 618 EPPESSKGILNVNLGCVNNLTELTEL 643


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 201 VAKPPENHVVTPDATSVEAKPDKIKAHRSIQEKETPDYLK 82
           + K PENHV   D     AK D      S   +  P Y++
Sbjct: 91  IPKVPENHVSLIDIDEARAKEDPNFQIHSTPSRMPPHYVQ 130


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -1

Query: 369  PTAADIKAPSSYTTTTVKPELNKELTTKPDQKLTTKYFTTETSVTQGHTTAKMAAAVAKP 190
            P      AP + TTTT+K +      +KP     T   ++ +++++   +A +A  V+KP
Sbjct: 1035 PNTTQAAAPVTSTTTTIK-QATTVSASKPAPSTVTSAASSPSNISK--PSAPVANNVSKP 1091


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,190
Number of Sequences: 5004
Number of extensions: 38240
Number of successful extensions: 107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)