Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a21
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0422 - 3084940-3087072                                           32   0.45 
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305...    30   1.4  
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444...    30   1.4  
09_03_0098 - 12341741-12341769,12342530-12342927,12343843-123438...    29   3.1  
08_02_1085 + 24237804-24238403                                         28   5.5  
01_06_0937 + 33175966-33178020                                         28   5.5  
10_07_0054 - 12421618-12422025,12422230-12422308,12423076-12423107     27   9.6  

>02_01_0422 - 3084940-3087072
          Length = 710

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +3

Query: 27  NTILQLKALHSLNLCSHRISNNLGSLSLGYCDEL 128
           N+I QLK L  L++CS+ +S  L S SLG C +L
Sbjct: 283 NSIGQLKRLKELHICSNNLSGELPS-SLGDCTKL 315


>02_01_0417 -
           3048519-3048710,3048903-3050600,3050622-3050909,
           3052308-3052377,3052417-3052668,3053235-3055297
          Length = 1520

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +3

Query: 27  NTILQLKALHSLNLCSHRISNNLGSLSLGYCDEL 128
           ++I QLK L  L++CS+ +S  L S SLG C  L
Sbjct: 294 DSIGQLKKLEELHMCSNNLSGELPS-SLGECTNL 326


>01_06_1519 +
           37942389-37943702,37944142-37944266,37944358-37944499,
           37944602-37944848,37946139-37946196,37947629-37947913,
           37947988-37948120
          Length = 767

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 291 TKPDQKLTTKYFTTETSVTQGHTTAKMAAAVAKPPENHVVTP--DATSVEAKPDKIKAHR 118
           TK ++    +    E    +    A++AAA A PPE     P  +A+S EAK ++ KA  
Sbjct: 129 TKAEETKAEEEPKAEEPAKEEEPKAEVAAAAAAPPEAGTEEPKAEASSEEAKTEEPKAEA 188

Query: 117 SIQE 106
           +  E
Sbjct: 189 AADE 192


>09_03_0098 -
           12341741-12341769,12342530-12342927,12343843-12343889,
           12344916-12345244,12345523-12345601
          Length = 293

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 268 NEIFYHRNERHARAHNCKNGCSCSKAP 188
           N ++YH ++  A A  C+  CS  K P
Sbjct: 71  NYMYYHMSDEDASAGTCEGSCSAGKHP 97


>08_02_1085 + 24237804-24238403
          Length = 199

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -1

Query: 264 KYFTTETSVTQGHTTAKMAAAVAKPPENHVVTPDATSVEAKPDKIKAHRSIQEKETPDYL 85
           K  ++  S +  HT+   A + +K PE     P A   +A   K  + +S    E PD  
Sbjct: 33  KSSSSSNSSSGSHTSPSKAPSPSKSPEKSGKAPAAAPPKAAAAKAPSGKSEAPSEAPD-A 91

Query: 84  KSGA 73
           +SGA
Sbjct: 92  ESGA 95


>01_06_0937 + 33175966-33178020
          Length = 684

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 310 LRFHSRGGVRTRCFDVSSGWTFSGCSSNFTFC 405
           +RF  RGG+  R   V    +  GC++N T C
Sbjct: 292 VRFFCRGGMVERAIQVLEQMSGHGCAANTTLC 323


>10_07_0054 - 12421618-12422025,12422230-12422308,12423076-12423107
          Length = 172

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
 Frame = -1

Query: 291 TKPDQKLTTKYFTTETSVTQGHTTAKMAAAV--AKPPENHVVT-----PDATSVEAKPDK 133
           T   Q   +K     T   QG+ +   AAA   +KP +   +T      +      KPD 
Sbjct: 28  THDPQHGLSKIAGESTKHQQGNISGSQAAAAVKSKPWKKRYLTFLSKFQNKMKKHKKPDN 87

Query: 132 IKAHRSIQEKETPDYLKSGANINLGCVMLLTVI 34
           IKAH +   K T   L S + I   C  L+ VI
Sbjct: 88  IKAHHTRSHK-TRSILLSSSQIMEECSNLVQVI 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,563,818
Number of Sequences: 37544
Number of extensions: 233415
Number of successful extensions: 719
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)