Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12a21
(642 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein. 32 1.5
M74027-1|AAA59875.1| 573|Homo sapiens mucin protein. 32 1.5
L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein. 32 1.5
AK097684-1|BAC05142.1| 499|Homo sapiens protein ( Homo sapiens ... 31 4.6
BC035678-1|AAH35678.1| 499|Homo sapiens coiled-coil domain cont... 30 6.1
AK055365-1|BAB70910.1| 719|Homo sapiens protein ( Homo sapiens ... 30 6.1
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein. 30 6.1
AF245505-1|AAF86402.1| 2828|Homo sapiens adlican protein. 30 8.0
>M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.
Length = 1270
Score = 32.3 bits (70), Expect = 1.5
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Frame = -1
Query: 372 SPTAADIKAPSSYTTTTVKPEL--NKELTTKPDQK---LTTKYFTTETSVTQGHTTAKMA 208
SP +P TTTT P + +TT P +TT TT S TT +
Sbjct: 1033 SPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSS 1092
Query: 207 AAVAKPPENHVVTPDATSVEAKP 139
PP + TP T+ + P
Sbjct: 1093 TTTPSPPPTTMTTPSPTTTPSPP 1115
Score = 31.1 bits (67), Expect = 3.5
Identities = 25/97 (25%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Frame = -1
Query: 372 SPTAADIKAPSSYTTTTVKPELNKE----LTTKPDQKLTTKYFTTETSVTQGHTTAKMAA 205
SP +P + TTTT P TT P T TT TT
Sbjct: 954 SPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPT 1013
Query: 204 AVAKPPENHVVTPDATSVEAKPDKIKAHRSIQEKETP 94
PP TP T+ + P I TP
Sbjct: 1014 TTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTP 1050
Score = 30.7 bits (66), Expect = 4.6
Identities = 25/80 (31%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Frame = -1
Query: 369 PTAADIKAPSSYTTT--TVKPELNKELTTKPDQKLTTKYFTTET-SVTQGHTTAKMAAAV 199
PT I P+S TT T P TT P T TT T S TT
Sbjct: 917 PTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTT 976
Query: 198 AKPPENHVVTPDATSVEAKP 139
PP TP T+ + P
Sbjct: 977 PSPPTTTTTTPPPTTTPSPP 996
>M74027-1|AAA59875.1| 573|Homo sapiens mucin protein.
Length = 573
Score = 32.3 bits (70), Expect = 1.5
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Frame = -1
Query: 372 SPTAADIKAPSSYTTTTVKPEL--NKELTTKPDQK---LTTKYFTTETSVTQGHTTAKMA 208
SP +P TTTT P + +TT P +TT TT S TT +
Sbjct: 316 SPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSS 375
Query: 207 AAVAKPPENHVVTPDATSVEAKP 139
PP + TP T+ + P
Sbjct: 376 TTTPSPPPTTMTTPSPTTTPSPP 398
Score = 31.9 bits (69), Expect = 2.0
Identities = 23/79 (29%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Frame = -1
Query: 369 PTAADIKAPSSYTTT--TVKPELNKELTTKPDQKLTTKYFTTETSVTQGHTTAKMAAAVA 196
PT I P+S TT T P TT P T TT TT
Sbjct: 161 PTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTP 220
Query: 195 KPPENHVVTPDATSVEAKP 139
PP TP T+ + P
Sbjct: 221 SPPPTTTTTPPPTTTPSPP 239
Score = 31.1 bits (67), Expect = 3.5
Identities = 25/97 (25%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Frame = -1
Query: 372 SPTAADIKAPSSYTTTTVKPELNKE----LTTKPDQKLTTKYFTTETSVTQGHTTAKMAA 205
SP +P + TTTT P TT P T TT TT
Sbjct: 237 SPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPT 296
Query: 204 AVAKPPENHVVTPDATSVEAKPDKIKAHRSIQEKETP 94
PP TP T+ + P I TP
Sbjct: 297 TTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTP 333
Score = 30.7 bits (66), Expect = 4.6
Identities = 25/80 (31%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Frame = -1
Query: 369 PTAADIKAPSSYTTT--TVKPELNKELTTKPDQKLTTKYFTTET-SVTQGHTTAKMAAAV 199
PT I P+S TT T P TT P T TT T S TT
Sbjct: 200 PTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTT 259
Query: 198 AKPPENHVVTPDATSVEAKP 139
PP TP T+ + P
Sbjct: 260 PSPPTTTTTTPPPTTTPSPP 279
>L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.
Length = 5179
Score = 32.3 bits (70), Expect = 1.5
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Frame = -1
Query: 372 SPTAADIKAPSSYTTTTVKPEL--NKELTTKPDQK---LTTKYFTTETSVTQGHTTAKMA 208
SP +P TTTT P + +TT P +TT TT S TT +
Sbjct: 1658 SPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSS 1717
Query: 207 AAVAKPPENHVVTPDATSVEAKP 139
PP + TP T+ + P
Sbjct: 1718 TTTPSPPPTTMTTPSPTTTPSPP 1740
Score = 31.1 bits (67), Expect = 3.5
Identities = 25/97 (25%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Frame = -1
Query: 372 SPTAADIKAPSSYTTTTVKPELNKE----LTTKPDQKLTTKYFTTETSVTQGHTTAKMAA 205
SP +P + TTTT P TT P T TT TT
Sbjct: 1579 SPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPT 1638
Query: 204 AVAKPPENHVVTPDATSVEAKPDKIKAHRSIQEKETP 94
PP TP T+ + P I TP
Sbjct: 1639 TTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTP 1675
Score = 30.7 bits (66), Expect = 4.6
Identities = 25/80 (31%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Frame = -1
Query: 369 PTAADIKAPSSYTTT--TVKPELNKELTTKPDQKLTTKYFTTET-SVTQGHTTAKMAAAV 199
PT I P+S TT T P TT P T TT T S TT
Sbjct: 1542 PTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTT 1601
Query: 198 AKPPENHVVTPDATSVEAKP 139
PP TP T+ + P
Sbjct: 1602 PSPPTTTTTTPPPTTTPSPP 1621
>AK097684-1|BAC05142.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ40365 fis, clone TESTI2034774. ).
Length = 499
Score = 30.7 bits (66), Expect = 4.6
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = -1
Query: 291 TKPDQKLTTKYFTTETSVTQGH--TTAKMAAAVAKPPENHVVT--PDATSVEAKPDKIKA 124
TK +Q+L T + + +++ H T K+ + + + HV T P+A + DK++
Sbjct: 365 TKYNQELYTTHGLIKGPLSKVHLETAEKLDRPLVRMYQRHVGTQLPEAARLAQGTDKLQC 424
Query: 123 HRSIQEKETPDYLKSGANINLG 58
H + EK + L + N++ G
Sbjct: 425 HITYLEKNLDELLATHKNLSWG 446
>BC035678-1|AAH35678.1| 499|Homo sapiens coiled-coil domain
containing 105 protein.
Length = 499
Score = 30.3 bits (65), Expect = 6.1
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -1
Query: 291 TKPDQKLTTKYFTTETSVTQGH--TTAKMAAAVAKPPENHVVT--PDATSVEAKPDKIKA 124
TK +Q+L T + + +++ H T K+ + + + HV T P+A + DK++
Sbjct: 365 TKYNQELYTTHGLIKGPLSKVHLETAEKLDRPLVRMYQRHVGTQLPEAARLAQGTDKLQC 424
Query: 123 HRSIQEKETPDYLKSGANINLG 58
H + EK + L + N+ G
Sbjct: 425 HITYLEKNLEELLATHKNLTWG 446
>AK055365-1|BAB70910.1| 719|Homo sapiens protein ( Homo sapiens
cDNA FLJ30803 fis, clone FEBRA2001245, weakly similar to
NAG14. ).
Length = 719
Score = 30.3 bits (65), Expect = 6.1
Identities = 17/81 (20%), Positives = 33/81 (40%)
Frame = -1
Query: 372 SPTAADIKAPSSYTTTTVKPELNKELTTKPDQKLTTKYFTTETSVTQGHTTAKMAAAVAK 193
S T PS ++T+V + ++ TKP + + T S + V++
Sbjct: 622 SSTTTSALPPSWTSSTSVSQKQKRKTGTKPSTEPQNEAVTNVESQNTNRNNSTALQLVSR 681
Query: 192 PPENHVVTPDATSVEAKPDKI 130
PP++ P + KP+ +
Sbjct: 682 PPDSVTEGPTSKRAHIKPNAL 702
>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
Length = 1349
Score = 30.3 bits (65), Expect = 6.1
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = -1
Query: 372 SPTAADIKAPSSYTTTTVKPELNKELTTKPDQKLTTKYFTTETSVTQGHTTAKMAAAVAK 193
+PT + I AP+ T+TT P T+ P + T ++ T T+A + + ++
Sbjct: 715 APTTSTISAPT--TSTTSAP--TASTTSAPTSTSSAPTTNTTSAPTTSTTSAPITSTISA 770
Query: 192 PPENHVVTPDATSVEA 145
P + TP +++ +
Sbjct: 771 PTTSTTSTPQTSTISS 786
>AF245505-1|AAF86402.1| 2828|Homo sapiens adlican protein.
Length = 2828
Score = 29.9 bits (64), Expect = 8.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 372 SPTAADIKAPSSYTTTTVKPELNKELTTKP 283
+PTAA +K P+S + +T+ L + TTKP
Sbjct: 1482 TPTAARMKEPASSSPSTILMSLGQTTTTKP 1511
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,559,305
Number of Sequences: 237096
Number of extensions: 1282106
Number of successful extensions: 3394
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3371
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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