Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a21
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.62 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   4.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 237  TQGHTTAKMAAAVAKPPENHVVTPDATSVEAKPDKIKAH 121
            T GH T      V  PP +  +T  AT+  +   K++ H
Sbjct: 1351 TFGHDTVTHQLIVHAPPHSPQITLTATTTNSLTMKVRPH 1389


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 250 RNERHARAHNCKNGCSCSKAP 188
           R  R  R+HN KNG    K P
Sbjct: 3   RTRRVKRSHNGKNGSPEEKRP 23


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/61 (21%), Positives = 25/61 (40%)
 Frame = -1

Query: 264 KYFTTETSVTQGHTTAKMAAAVAKPPENHVVTPDATSVEAKPDKIKAHRSIQEKETPDYL 85
           +YF  + S        K     A+P + ++      +VEA   ++     + E+E  D+ 
Sbjct: 283 RYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEEEKADWW 342

Query: 84  K 82
           K
Sbjct: 343 K 343


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/61 (21%), Positives = 25/61 (40%)
 Frame = -1

Query: 264 KYFTTETSVTQGHTTAKMAAAVAKPPENHVVTPDATSVEAKPDKIKAHRSIQEKETPDYL 85
           +YF  + S        K     A+P + ++      +VEA   ++     + E+E  D+ 
Sbjct: 283 RYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEEEKADWW 342

Query: 84  K 82
           K
Sbjct: 343 K 343


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/61 (21%), Positives = 25/61 (40%)
 Frame = -1

Query: 264 KYFTTETSVTQGHTTAKMAAAVAKPPENHVVTPDATSVEAKPDKIKAHRSIQEKETPDYL 85
           +YF  + S        K     A+P + ++      +VEA   ++     + E+E  D+ 
Sbjct: 283 RYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEEEKADWW 342

Query: 84  K 82
           K
Sbjct: 343 K 343


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -3

Query: 265 EIFYHRNERHARAHNCKNGCS 203
           E+FY+ +++    +NC+  C+
Sbjct: 232 ELFYYMHQQIMARYNCERLCN 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,342
Number of Sequences: 438
Number of extensions: 2429
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)