Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12a17
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 38 0.002
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 31 0.21
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 29 0.49
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 28 1.5
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 27 2.6
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 4.5
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 26 6.0
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 26 6.0
SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 26 6.0
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 25 7.9
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -2
Query: 412 GNVCSYFVDVYPTSYRGLATSLGMMTARLVSFAGVNIIGNVITDYCTPTFYISAAFVFSG 233
G + +Y +V+P+ RG A L R++ I P F A F+F+G
Sbjct: 479 GVLYAYTPEVFPSKVRGTAVGLAASANRILGIFSPVIAMRANLTTSAPIFVSGALFIFAG 538
Query: 232 VIVCFF 215
++V FF
Sbjct: 539 ILVVFF 544
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 30.7 bits (66), Expect = 0.21
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 475 VPLGCS*LRIRSGSRLGAFVF*KLLEPRWLSP 570
+PLGC+ LR+ + ++ GA + +L+P W SP
Sbjct: 630 MPLGCNILRVDAQTKDGALMDMLILQPIWRSP 661
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 29.5 bits (63), Expect = 0.49
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = -2
Query: 463 VANIIFFILMQSTAIGIGNVCSYFVDVYPTSYRGLATSLGMMTARLVSFAGVNIIGN--- 293
V I + + S A G+GN+ +++P S RGL T GM TA V++AG IG
Sbjct: 444 VVLISMIVYVASYASGLGNLPWQQSELFPMSVRGLGT--GMSTA--VNWAGNLGIGASFL 499
Query: 292 VITDYCTP--TFYISAAFVFSGVIVCFFLPAD 203
+ TP TF + F G + F D
Sbjct: 500 TLMSEITPTGTFALYGGLCFLGWLGALFCYPD 531
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 421 IGIGNVCSYFVDVYPTSYRGLATSLGMMTARLVSFAGVNIIG 296
+G C Y D++PT G A +G +T G ++G
Sbjct: 292 LGAAATCKYVFDLHPTDRMGCAGDVGWITGHTYIVYGPLMLG 333
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -2
Query: 562 AIVAQGASRRRMLLIGILIVSGVSCILVELKHPVANIIF--FILMQSTAIGIGNVCSYFV 389
A +++ R+ L IG+ + S V I V + I+ F + + V + F
Sbjct: 195 APMSEITGRKTPLYIGLFLFS-VFQIAVATAQDIQTIMICRFFGGYGACVPLCVVAAAFA 253
Query: 388 DVYPTSYRGLATSL 347
D+YP YRG A ++
Sbjct: 254 DMYPNRYRGTAITI 267
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = -1
Query: 182 LFGLLEKRIIKMISKNDLDYWEKE---KNISSSKRIWIIGKLKKICPK 48
+F L++K ++S ++L+ ++ KN+S I+ K+K+ICP+
Sbjct: 192 IFFLIDKNNDDLLSVDELNSLSEKCFSKNLSIEDASEILSKVKEICPE 239
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 386 VNKIRTHISDSYCRGLHQNKENYISD 463
V IRTH +D +C G+ E Y D
Sbjct: 135 VRYIRTHYNDEFCIGVAGYPEGYSPD 160
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -3
Query: 213 YLQTEKLTNDAIWITGKKNNKNDIQK*FGLLGKRKKYIIFKKDLDYW 73
+ +TE+L DA N +N + L+G+R + +KD+ +W
Sbjct: 46 FTETERLVGDAAKNQAAMNPRNTVFDAKRLIGRRYEDPETQKDIKHW 92
>SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 123 LGKRKKYIIFKKDLDYWKIEKNMSKND 43
L K +KY++ KD +W+I +N D
Sbjct: 90 LSKAEKYVLENKDDMFWRIVQNSKTAD 116
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 303 IFTPANETSRAVIIPKLVARPL 368
+FTP N T + +PK++A P+
Sbjct: 673 LFTPGNVTVKYYPVPKVIATPV 694
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,994
Number of Sequences: 5004
Number of extensions: 56100
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -