Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a17
         (701 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC100827-1|AAI00828.1|  727|Homo sapiens synaptic vesicle glycop...    31   5.3  
BC100826-1|AAI00827.1|  727|Homo sapiens synaptic vesicle glycop...    31   5.3  
BC100825-1|AAI00826.1|  727|Homo sapiens synaptic vesicle glycop...    31   5.3  
BC100824-1|AAI00825.1|  727|Homo sapiens synaptic vesicle glycop...    31   5.3  
AB028977-1|BAA83006.1|  480|Homo sapiens KIAA1054 protein protein.     31   5.3  
BC029503-1|AAH29503.1|  518|Homo sapiens major facilitator super...    30   9.2  
AK074564-1|BAC11062.1|  518|Homo sapiens protein ( Homo sapiens ...    30   9.2  

>BC100827-1|AAI00828.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
 Frame = -2

Query: 571 VVTAIVAQGASRRRMLLIGILIVSGVSCILVELKHPVANII-FFILMQSTAIGIGNVCSY 395
           +V+A++     R  ML  G +++SG+SC  +      + +I    L     I   N    
Sbjct: 598 IVSALLMDRIGRLTMLG-GSMVLSGISCFFLWFGTSESMMIGMLCLYNGLTISAWNSLDV 656

Query: 394 F-VDVYPTSYRGLATSLGMMTA--RLVSFAGVNIIGNVITDYCTPTFYISAAFVFSGVIV 224
             V++YPT  R  AT  G + A  +  +  G  I G++++   +    +++  +  G +V
Sbjct: 657 VTVELYPTDRR--ATGFGFLNALCKAAAVLGNLIFGSLVSITKSIPILLASTVLVCGGLV 714

Query: 223 CFFLPADR 200
              LP  R
Sbjct: 715 GLCLPDTR 722


>BC100826-1|AAI00827.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
 Frame = -2

Query: 571 VVTAIVAQGASRRRMLLIGILIVSGVSCILVELKHPVANII-FFILMQSTAIGIGNVCSY 395
           +V+A++     R  ML  G +++SG+SC  +      + +I    L     I   N    
Sbjct: 598 IVSALLMDRIGRLTMLG-GSMVLSGISCFFLWFGTSESMMIGMLCLYNGLTISAWNSLDV 656

Query: 394 F-VDVYPTSYRGLATSLGMMTA--RLVSFAGVNIIGNVITDYCTPTFYISAAFVFSGVIV 224
             V++YPT  R  AT  G + A  +  +  G  I G++++   +    +++  +  G +V
Sbjct: 657 VTVELYPTDRR--ATGFGFLNALCKAAAVLGNLIFGSLVSITKSIPILLASTVLVCGGLV 714

Query: 223 CFFLPADR 200
              LP  R
Sbjct: 715 GLCLPDTR 722


>BC100825-1|AAI00826.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
 Frame = -2

Query: 571 VVTAIVAQGASRRRMLLIGILIVSGVSCILVELKHPVANII-FFILMQSTAIGIGNVCSY 395
           +V+A++     R  ML  G +++SG+SC  +      + +I    L     I   N    
Sbjct: 598 IVSALLMDRIGRLTMLG-GSMVLSGISCFFLWFGTSESMMIGMLCLYNGLTISAWNSLDV 656

Query: 394 F-VDVYPTSYRGLATSLGMMTA--RLVSFAGVNIIGNVITDYCTPTFYISAAFVFSGVIV 224
             V++YPT  R  AT  G + A  +  +  G  I G++++   +    +++  +  G +V
Sbjct: 657 VTVELYPTDRR--ATGFGFLNALCKAAAVLGNLIFGSLVSITKSIPILLASTVLVCGGLV 714

Query: 223 CFFLPADR 200
              LP  R
Sbjct: 715 GLCLPDTR 722


>BC100824-1|AAI00825.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
 Frame = -2

Query: 571 VVTAIVAQGASRRRMLLIGILIVSGVSCILVELKHPVANII-FFILMQSTAIGIGNVCSY 395
           +V+A++     R  ML  G +++SG+SC  +      + +I    L     I   N    
Sbjct: 598 IVSALLMDRIGRLTMLG-GSMVLSGISCFFLWFGTSESMMIGMLCLYNGLTISAWNSLDV 656

Query: 394 F-VDVYPTSYRGLATSLGMMTA--RLVSFAGVNIIGNVITDYCTPTFYISAAFVFSGVIV 224
             V++YPT  R  AT  G + A  +  +  G  I G++++   +    +++  +  G +V
Sbjct: 657 VTVELYPTDRR--ATGFGFLNALCKAAAVLGNLIFGSLVSITKSIPILLASTVLVCGGLV 714

Query: 223 CFFLPADR 200
              LP  R
Sbjct: 715 GLCLPDTR 722


>AB028977-1|BAA83006.1|  480|Homo sapiens KIAA1054 protein protein.
          Length = 480

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
 Frame = -2

Query: 571 VVTAIVAQGASRRRMLLIGILIVSGVSCILVELKHPVANII-FFILMQSTAIGIGNVCSY 395
           +V+A++     R  ML  G +++SG+SC  +      + +I    L     I   N    
Sbjct: 351 IVSALLMDRIGRLTMLG-GSMVLSGISCFFLWFGTSESMMIGMLCLYNGLTISAWNSLDV 409

Query: 394 F-VDVYPTSYRGLATSLGMMTA--RLVSFAGVNIIGNVITDYCTPTFYISAAFVFSGVIV 224
             V++YPT  R  AT  G + A  +  +  G  I G++++   +    +++  +  G +V
Sbjct: 410 VTVELYPTDRR--ATGFGFLNALCKAAAVLGNLIFGSLVSITKSIPILLASTVLVCGGLV 467

Query: 223 CFFLPADR 200
              LP  R
Sbjct: 468 GLCLPDTR 475


>BC029503-1|AAH29503.1|  518|Homo sapiens major facilitator
           superfamily domain containing 8 protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 21/84 (25%), Positives = 40/84 (47%)
 Frame = -2

Query: 538 RRRMLLIGILIVSGVSCILVELKHPVANIIFFILMQSTAIGIGNVCSYFVDVYPTSYRGL 359
           R+  L++ ILI    +C+   L  P ++  +++L+    +GIG      V     SY   
Sbjct: 103 RKEPLIVSILISVAANCLYAYLHIPASHNKYYMLVARGLLGIGAGNVAVV----RSYTAG 158

Query: 358 ATSLGMMTARLVSFAGVNIIGNVI 287
           ATSL   T+ + + +    +G ++
Sbjct: 159 ATSLQERTSSMANISMCQALGFIL 182


>AK074564-1|BAC11062.1|  518|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90083 fis, clone HEMBA1004982, weakly similar to
           TETRACYCLINE RESISTANCE PROTEIN, CLASS E. ).
          Length = 518

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 21/84 (25%), Positives = 40/84 (47%)
 Frame = -2

Query: 538 RRRMLLIGILIVSGVSCILVELKHPVANIIFFILMQSTAIGIGNVCSYFVDVYPTSYRGL 359
           R+  L++ ILI    +C+   L  P ++  +++L+    +GIG      V     SY   
Sbjct: 103 RKEPLIVSILISVAANCLYAYLHIPASHNKYYMLVARGLLGIGAGNVAVV----RSYTAG 158

Query: 358 ATSLGMMTARLVSFAGVNIIGNVI 287
           ATSL   T+ + + +    +G ++
Sbjct: 159 ATSLQERTSSMANISMCQALGFIL 182


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,586,188
Number of Sequences: 237096
Number of extensions: 1741612
Number of successful extensions: 3195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3195
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)