Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12a17
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025457-10|AAB70972.1| 148|Caenorhabditis elegans Hypothetical... 30 1.4
Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr... 29 4.3
U80028-1|AAN73865.1| 369|Caenorhabditis elegans Serpentine rece... 29 4.3
U00032-12|AAA50629.1| 482|Caenorhabditis elegans Hypothetical p... 28 5.6
Z68004-9|CAA91985.2| 120|Caenorhabditis elegans Hypothetical pr... 28 7.4
U64848-12|AAY86244.1| 231|Caenorhabditis elegans Hypothetical p... 28 7.4
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p... 28 7.4
AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical ... 27 9.8
>AF025457-10|AAB70972.1| 148|Caenorhabditis elegans Hypothetical
protein C08E3.11 protein.
Length = 148
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +2
Query: 101 IYFFLFP-NNPNHFWISFLLFFFPVIQIASF-VSFSVC 208
++F +F N+P H I ++FFF ++++ F SFS+C
Sbjct: 109 LFFCIFNLNSPKHPLIDKVVFFFALVELKYFPYSFSIC 146
>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
protein C36B1.8b protein.
Length = 1052
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/81 (27%), Positives = 29/81 (35%)
Frame = +2
Query: 218 ETHDHTAEYESGRNVESGRTIVSNDVSDYIHSGERDEPCCHHS*ACRETSIRSRIYVNKI 397
E +TA +SG + + HSG R H+ S + NK
Sbjct: 161 EKTSNTANSQSGAFKGTTNKDRPKEKEKNTHSGNRQSQVNHNHHHSNHVSGNQQNRKNKN 220
Query: 398 RTHISDSYCRGLHQNKENYIS 460
R H + SY G N NY S
Sbjct: 221 RDHSNQSYRGGYTHNHNNYHS 241
>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
protein C36B1.8a protein.
Length = 1049
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/81 (27%), Positives = 29/81 (35%)
Frame = +2
Query: 218 ETHDHTAEYESGRNVESGRTIVSNDVSDYIHSGERDEPCCHHS*ACRETSIRSRIYVNKI 397
E +TA +SG + + HSG R H+ S + NK
Sbjct: 161 EKTSNTANSQSGAFKGTTNKDRPKEKEKNTHSGNRQSQVNHNHHHSNHVSGNQQNRKNKN 220
Query: 398 RTHISDSYCRGLHQNKENYIS 460
R H + SY G N NY S
Sbjct: 221 RDHSNQSYRGGYTHNHNNYHS 241
>U80028-1|AAN73865.1| 369|Caenorhabditis elegans Serpentine
receptor, class w protein138 protein.
Length = 369
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Frame = -2
Query: 505 VSGVSCILVELKH-------PVANIIFFILMQSTAIGIGNVCSYFVDVYPTSYRGLATSL 347
+ ++CIL+ + H + N I+M TA+ I ++C++FV + R L
Sbjct: 42 IISITCILINILHFTILTRKSMRNSSINIIM--TAVAILDICTFFVGLKKIVERFLRDYY 99
Query: 346 GMMTARLVSFAGVNIIGNVITDY 278
A +F V + V+ DY
Sbjct: 100 DCFQAETYTFVIVETLFQVVQDY 122
>U00032-12|AAA50629.1| 482|Caenorhabditis elegans Hypothetical
protein F37A4.1 protein.
Length = 482
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -2
Query: 301 IGNVITDYCTPTFYISAAFVFSGVIVCFFLPAD 203
+GN + + +YI+++ F VI+C+ D
Sbjct: 30 LGNTVISFSAGIYYIASSLAFGPVILCYLYSRD 62
>Z68004-9|CAA91985.2| 120|Caenorhabditis elegans Hypothetical
protein F47B10.5 protein.
Length = 120
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 107 FFLFPNNPNHF-WISFLLFFFPVIQIASFVSFSVCR-*KETHDHTAEYESGRNV 262
F P +P W+ + FF ++ +S V+ +CR + ++ +Y S R V
Sbjct: 41 FVCIPFDPKFMMWLMIISFFIVLLTCSSLVACYICRAVRRSYQMQVQYNSNREV 94
>U64848-12|AAY86244.1| 231|Caenorhabditis elegans Hypothetical
protein C50E3.14 protein.
Length = 231
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -1
Query: 197 N*RMTLFGLLEK--RIIKMISKNDLDYWEKEKNISSSKRIWIIGKLKKICPKMIRFCLLI 24
N TL GL + RI ++ ++ E++I S +WI GK + CP C L
Sbjct: 102 NINSTLSGLESEAERIYVVVIEDQAVAIRNERSIDSRWGVWIDGKHQSSCPTTATGCDLT 161
Query: 23 SHVEF 9
+ F
Sbjct: 162 KNFSF 166
>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
protein B0222.9 protein.
Length = 1217
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -2
Query: 700 TIRRSANEFSQIKLQNYTETVICNDEISHNTIYSGIFYGFFFCV 569
T+ ++ E +Q+ ++ + E + N I+S GF FC+
Sbjct: 369 TLLNNSGELTQVAIEEFAEKKLFATHTIVNAIFSRSLTGFLFCL 412
>AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical
protein C45H4.13 protein.
Length = 349
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -1
Query: 287 Y*LLYAHFLHFCRFRIQRCDRVFLFTCRQKN*RMTLFGLLEKRIIKMISKNDL 129
Y + +F FC F ++ DR+FL + T+ LE ++ K++S+ +L
Sbjct: 16 YSAMSTNFYKFCHFEPKKFDRIFLLKLWKFR---TILRKLEVKLKKLMSEREL 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,175,544
Number of Sequences: 27780
Number of extensions: 308751
Number of successful extensions: 931
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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