Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12a16
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0916 - 24271151-24271894 32 0.28
11_08_0067 - 28135216-28135728 32 0.37
11_08_0066 - 28131521-28132012 27 0.56
03_02_0915 + 12360079-12360095,12360225-12361353 30 1.5
04_04_0178 - 23337801-23337896,23337999-23338067,23338171-233382... 29 2.0
03_06_0063 - 31391870-31392679 29 2.0
07_03_0072 - 13051145-13052362 29 2.6
03_04_0187 - 18236041-18236643 29 2.6
07_03_1005 + 23249040-23249228,23250453-23250574,23250654-232508... 29 3.4
04_04_0734 + 27648661-27649596 29 3.4
03_05_0291 - 22837412-22838128 29 3.4
06_03_0974 - 26459747-26460190,26460278-26460946 28 4.6
05_05_0193 - 23138066-23138434,23138489-23138581 28 4.6
01_06_1280 - 35959452-35960105 28 4.6
01_06_1216 - 35482266-35482464,35483392-35483534 28 4.6
01_03_0069 + 12192220-12192252,12192457-12192612,12193246-12193404 28 4.6
12_02_0884 - 23986393-23987486,23988213-23988314,23988561-239886... 27 8.0
12_02_0010 - 12275652-12276221,12276804-12276935 27 8.0
08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187 27 8.0
01_06_1614 - 38648495-38649706 27 8.0
>12_02_0916 - 24271151-24271894
Length = 247
Score = 32.3 bits (70), Expect = 0.28
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Frame = -3
Query: 307 SLRHRCGTCDKRFSTAGALATHRAVRXEGARP----HXXXXXXXXXXXXXXLHKHVRAVH 140
++ HRC C K F++ AL H+A + P V
Sbjct: 88 AVEHRCSVCGKAFASYQALGGHKASHRKPPPPAMVDDDEVVVETKPAAIATPSSSASGVS 147
Query: 139 RGGRPPAVHVCHTCGKAF 86
GG A H C+ CGKAF
Sbjct: 148 GGGGGRA-HECNVCGKAF 164
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEG 221
H C C K F T AL H+ +G
Sbjct: 155 HECNVCGKAFPTGQALGGHKRCHYDG 180
>11_08_0067 - 28135216-28135728
Length = 170
Score = 31.9 bits (69), Expect = 0.37
Identities = 21/70 (30%), Positives = 25/70 (35%)
Frame = -3
Query: 295 RCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPAV 116
+C TC +RFST AL HR H + + G P V
Sbjct: 46 QCRTCGRRFSTFQALGGHRT-------SHKRPRVRADGLDLLLGARPGKLGAGGASTPVV 98
Query: 115 HVCHTCGKAF 86
H C CGK F
Sbjct: 99 HRCDMCGKVF 108
>11_08_0066 - 28131521-28132012
Length = 163
Score = 26.6 bits (56), Expect(2) = 0.56
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -3
Query: 385 ATTTKQSFPQIYTDQPLLPRRVVKLVSLRHRCGTCDKRFSTAGALATHR 239
+TT S +P RR + + C TC +RF + AL HR
Sbjct: 42 STTAMSSSGDEEDAEPRRRRRDEEAAAAAFECRTCGRRFPSHQALGGHR 90
Score = 23.4 bits (48), Expect(2) = 0.56
Identities = 7/18 (38%), Positives = 9/18 (50%)
Frame = -3
Query: 136 GGRPPAVHVCHTCGKAFR 83
G P +H C CG F+
Sbjct: 104 GPSKPLIHACEVCGLGFQ 121
>03_02_0915 + 12360079-12360095,12360225-12361353
Length = 381
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = -3
Query: 151 RAVHRGGRPPAVHVCHTC---GKAFRSSSVTDEPRAD 50
R H G PPA +VCH C G + +PR D
Sbjct: 108 RGAHAGRAPPAGYVCHRCRVPGHFIQHCPTNGDPRFD 144
>04_04_0178 -
23337801-23337896,23337999-23338067,23338171-23338253,
23338694-23338772,23338956-23339120,23339230-23339274,
23339370-23339444,23340135-23340311,23340398-23340721,
23340829-23340897
Length = 393
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 123 GGRPPRCTARTCLCSEEAEAR-AAPHSAQAWGRA 221
G PPRC AR SE+A A ++PHSA+A G A
Sbjct: 12 GPAPPRC-ARAETDSEDAVATTSSPHSAEAAGAA 44
>03_06_0063 - 31391870-31392679
Length = 269
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEG 221
HRC C K F T AL H+ +G
Sbjct: 166 HRCSICQKEFPTGQALGGHKRKHYDG 191
>07_03_0072 - 13051145-13052362
Length = 405
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +3
Query: 15 TSHEKGFSPDDASARGS-----SVTLELLKAFPQVWHTCTAGGRPPRCTARTC 158
T+ EK + DD +R + + TLE + W C AG R PRC+A C
Sbjct: 170 TTREKLRATDDTPSRAAVPTFVTPTLETRRRDQGRWRACLAGTR-PRCSAWQC 221
>03_04_0187 - 18236041-18236643
Length = 200
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 301 RHRCGTCDKRFSTAGALATHR 239
RHRC C + F+T AL H+
Sbjct: 108 RHRCSVCHRTFATGQALGGHK 128
>07_03_1005 +
23249040-23249228,23250453-23250574,23250654-23250800,
23250932-23250998,23251763-23251836,23252010-23252102,
23253433-23253550,23254340-23254402,23254774-23254806,
23255325-23255399
Length = 326
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +3
Query: 132 PPRCTARTCLCSEEAEARAAPHSAQAWGRAPSCRT-ARCVASAPAVLNR-LSHVPHLCLR 305
PP A L S A AP +A W R + R ++ A+ PA L++ LS + C R
Sbjct: 30 PPPPPASPLLSSASARFPRAPCNAARWSRRDAVRVCSQAGAAGPAPLSKTLSDLKDSCWR 89
Query: 306 ETSFTTRRGS 335
T RG+
Sbjct: 90 FLRPHTIRGT 99
>04_04_0734 + 27648661-27649596
Length = 311
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = -3
Query: 346 DQPLLPRRVVKLVSLRHRCGTCDKRFSTAGALATHRAVRXEGAR 215
D P P R +C C K F + AL HRA G R
Sbjct: 158 DAPPAPAAAAAQKRTRFQCPACKKVFRSYQALGGHRASHMRGGR 201
>03_05_0291 - 22837412-22838128
Length = 238
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEG 221
H C C K F T AL H+ EG
Sbjct: 155 HECSVCKKTFPTGQALGGHKRCHYEG 180
>06_03_0974 - 26459747-26460190,26460278-26460946
Length = 370
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 127 PPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
P AVH C CG + ++ P ++ E+ + CEVC
Sbjct: 21 PAAVH-CRGCGGVYLCTACDARPGHARAAHERVWVCEVC 58
>05_05_0193 - 23138066-23138434,23138489-23138581
Length = 153
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 159 LCSEEAEARAAPHSAQAWGRAPSCRTA 239
L EEAE A S +AW + P CR +
Sbjct: 73 LRDEEAEGHALDGSLRAWSQQPPCRVS 99
>01_06_1280 - 35959452-35960105
Length = 217
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Frame = -3
Query: 292 CGTCDKRFSTAGALATHRA--VRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
C TC+++F T AL HRA R + H L + P
Sbjct: 61 CKTCNRQFPTFQALGGHRASHKRPRQQQQHALGGGAGADDAGLCLGRQPTPPRPQPAKPR 120
Query: 118 VHVCHTCGKAF 86
VH C CG F
Sbjct: 121 VHECPVCGLEF 131
>01_06_1216 - 35482266-35482464,35483392-35483534
Length = 113
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/66 (31%), Positives = 26/66 (39%)
Frame = -3
Query: 409 CTGRLVL*ATTTKQSFPQIYTDQPLLPRRVVKLVSLRHRCGTCDKRFSTAGALATHRAVR 230
CT +L ATT P + P+L R K + R KR G L RA R
Sbjct: 12 CTPKLSQ-ATTVTWQLPNLPLGVPVLENRASKQWHIDRRAREEKKRARREGDLGMKRAGR 70
Query: 229 XEGARP 212
A+P
Sbjct: 71 NRAAKP 76
>01_03_0069 + 12192220-12192252,12192457-12192612,12193246-12193404
Length = 115
Score = 28.3 bits (60), Expect = 4.6
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +3
Query: 78 ELLKAFPQVWHTCTA---GGRP---PRCTARTCLCSEEAEARAAPHSAQAWGRAPSCRTA 239
EL+ P+ H C GRP PRC C C++E EA A P A GR R
Sbjct: 4 ELINPTPKPTHGCLPFCFRGRPCRKPRCVFSGCACADE-EAVAVPVQAGP-GRTAGVRRP 61
Query: 240 RCV 248
V
Sbjct: 62 SAV 64
>12_02_0884 -
23986393-23987486,23988213-23988314,23988561-23988642,
23989231-23989368
Length = 471
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATH 242
HRC TC K F + AL H
Sbjct: 383 HRCNTCGKSFGSGQALGGH 401
>12_02_0010 - 12275652-12276221,12276804-12276935
Length = 233
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 117 TAGGRPPRCTARTCLCSEEA-EARAAPHSAQAWGRAPSC 230
T GG R + S A + + A H A+AWGR SC
Sbjct: 152 TQGGEAARFSGEAVFRSLTATQFQKAEHCAEAWGRHGSC 190
>08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187
Length = 817
Score = 27.5 bits (58), Expect = 8.0
Identities = 22/70 (31%), Positives = 29/70 (41%)
Frame = +3
Query: 45 DASARGSSVTLELLKAFPQVWHTCTAGGRPPRCTARTCLCSEEAEARAAPHSAQAWGRAP 224
D S G +LE+ + V AGG RC T CSE A A +WG P
Sbjct: 34 DDSGWGGDASLEVYREAAAVATRGGAGGGGERCEHMT--CSEHDVAEIVSKIA-SWG-DP 89
Query: 225 SCRTARCVAS 254
C+ C+ +
Sbjct: 90 VCQDETCMCT 99
>01_06_1614 - 38648495-38649706
Length = 403
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 136 GGRPPAVHVCHTCGKAF 86
G RP H C TCGK F
Sbjct: 285 GARPEGNHPCKTCGKEF 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,239,329
Number of Sequences: 37544
Number of extensions: 255746
Number of successful extensions: 942
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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