Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12a16
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83227-4|CAB05729.2| 336|Caenorhabditis elegans Hypothetical pr... 50 9e-07
U63996-1|AAC47234.1| 336|Caenorhabditis elegans zinc finger pro... 50 9e-07
U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical pr... 49 3e-06
AC006625-13|ABI18147.1| 273|Caenorhabditis elegans Abnormal che... 47 8e-06
AC006625-12|AAK68272.2| 214|Caenorhabditis elegans Abnormal che... 47 8e-06
Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical pr... 46 1e-05
AC024826-17|AAF60789.1| 662|Caenorhabditis elegans Hypothetical... 46 1e-05
AC024812-7|AAF59548.2| 419|Caenorhabditis elegans Hypothetical ... 44 6e-05
U23454-9|AAC46522.2| 249|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z82090-4|CAB05008.2| 543|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z69883-6|CAA93744.2| 461|Caenorhabditis elegans Hypothetical pr... 39 0.003
U61955-7|AAV58862.1| 456|Caenorhabditis elegans Hypothetical pr... 36 0.015
U61955-6|AAC24408.2| 505|Caenorhabditis elegans Hypothetical pr... 36 0.015
Z83228-4|CAB05735.2| 318|Caenorhabditis elegans Hypothetical pr... 36 0.020
Z83115-7|CAJ85758.1| 318|Caenorhabditis elegans Hypothetical pr... 36 0.020
Z83115-6|CAB05558.1| 384|Caenorhabditis elegans Hypothetical pr... 36 0.020
Z81137-12|CAJ85772.1| 318|Caenorhabditis elegans Hypothetical p... 36 0.020
Z81137-11|CAB03472.1| 384|Caenorhabditis elegans Hypothetical p... 36 0.020
AL132860-29|CAB60505.2| 386|Caenorhabditis elegans Hypothetical... 36 0.020
AL021483-7|CAA16344.3| 218|Caenorhabditis elegans Hypothetical ... 36 0.027
AF003137-3|AAB93640.1| 625|Caenorhabditis elegans Hypothetical ... 35 0.047
AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally sym... 34 0.063
AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally sym... 34 0.063
U70850-3|AAB09122.3| 596|Caenorhabditis elegans Zinc finger plu... 34 0.083
AY289599-1|AAP43944.1| 596|Caenorhabditis elegans ZAG-1 protein. 34 0.083
AY224511-1|AAP37457.1| 596|Caenorhabditis elegans ZAG-1 protein. 34 0.083
U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defecti... 33 0.11
U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defecti... 33 0.11
AF000194-1|AAK39376.4| 386|Caenorhabditis elegans Hypothetical ... 33 0.11
AF003137-2|AAB93641.2| 464|Caenorhabditis elegans Temporarily a... 33 0.19
Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical pr... 32 0.25
U67951-2|AAB07570.2| 302|Caenorhabditis elegans Regulator of fu... 32 0.25
U67951-1|AAQ65207.1| 315|Caenorhabditis elegans Regulator of fu... 32 0.25
U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short for... 32 0.25
U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form... 32 0.25
AY115477-1|AAM55473.1| 303|Caenorhabditis elegans zinc finger p... 32 0.25
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 32 0.25
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 32 0.25
AF045645-3|AAC02610.2| 193|Caenorhabditis elegans Hypothetical ... 32 0.25
AL034392-4|CAA22307.2| 203|Caenorhabditis elegans Hypothetical ... 32 0.33
U10438-3|AAA19082.2| 242|Caenorhabditis elegans Drosophila odd-... 31 0.44
U41020-1|AAA82331.2| 470|Caenorhabditis elegans Hypothetical pr... 30 1.0
AC006614-2|AAF39763.1| 254|Caenorhabditis elegans Drosophila od... 30 1.0
Z36752-3|CAA85325.1| 422|Caenorhabditis elegans Hypothetical pr... 29 1.8
U28736-2|AAA68307.1| 620|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z81547-1|CAB04459.1| 354|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical pr... 29 2.4
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 29 2.4
S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein. 29 2.4
AC026301-1|AAK68897.1| 280|Caenorhabditis elegans Hypothetical ... 29 2.4
AF125451-2|AAP82633.1| 167|Caenorhabditis elegans Hypothetical ... 29 3.1
Z79603-2|CAB01893.4| 500|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z66515-3|CAA91352.1| 322|Caenorhabditis elegans Hypothetical pr... 28 4.1
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 28 4.1
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 28 4.1
U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protei... 28 4.1
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 28 4.1
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 28 4.1
S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein. 28 4.1
AF016673-3|AAB66122.2| 366|Caenorhabditis elegans Hypothetical ... 28 4.1
AF003144-4|AAB54197.2| 164|Caenorhabditis elegans Hypothetical ... 28 4.1
AF003142-5|ABQ13067.1| 474|Caenorhabditis elegans Hypothetical ... 28 4.1
AF003142-4|AAK73888.1| 856|Caenorhabditis elegans Hypothetical ... 28 4.1
Z79755-8|CAB02113.1| 270|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 28 5.4
U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protei... 28 5.4
AF519108-1|AAM74222.1| 909|Caenorhabditis elegans EOR-1 protein. 28 5.4
AF502568-1|AAM74151.1| 909|Caenorhabditis elegans EOR-1 protein. 28 5.4
AF169201-1|AAF01678.1| 270|Caenorhabditis elegans CES-1 protein. 28 5.4
AF100669-8|AAK39268.1| 909|Caenorhabditis elegans Egl-1 suppres... 28 5.4
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81461-1|CAB03833.1| 944|Caenorhabditis elegans Hypothetical pr... 27 9.5
U80952-2|AAB38094.1| 309|Caenorhabditis elegans Muscle attachme... 27 9.5
U80952-1|AAU20846.1| 315|Caenorhabditis elegans Muscle attachme... 27 9.5
AF045642-6|AAC02590.1| 632|Caenorhabditis elegans Hypothetical ... 27 9.5
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z83227-4|CAB05729.2| 336|Caenorhabditis elegans Hypothetical
protein F45B8.4 protein.
Length = 336
Score = 50.4 bits (115), Expect = 9e-07
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = -3
Query: 292 CGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPAVH 113
C C K F + L+TH + + RP+ + KH +H G +P H
Sbjct: 156 CKQCGKTFKRSSTLSTHLLIHSD-TRPYPCEYCGKRFHQKSDMKKHTY-IHTGEKP---H 210
Query: 112 VCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
C CGKAF +SS++ R +G KPF+C+VC
Sbjct: 211 KCTVCGKAFSQSSNLITHTR--KHTGFKPFACDVC 243
Score = 36.3 bits (80), Expect = 0.015
Identities = 28/94 (29%), Positives = 35/94 (37%)
Frame = -3
Query: 292 CGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPAVH 113
C C K FST AL H+ V + L H+ +H RP +
Sbjct: 128 CQKCTKLFSTIAALEQHQQVHVSD-KQFECKQCGKTFKRSSTLSTHL-LIHSDTRP---Y 182
Query: 112 VCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
C CGK F S + +GEKP C VC
Sbjct: 183 PCEYCGKRFHQKS-DMKKHTYIHTGEKPHKCTVC 215
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/58 (27%), Positives = 21/58 (36%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRP 125
H+C C K FS + L TH + G +P +H R H G P
Sbjct: 210 HKCTVCGKAFSQSSNLITHTR-KHTGFKPFACDVCGRTFQRKVDRRRH-RESHHPGHP 265
>U63996-1|AAC47234.1| 336|Caenorhabditis elegans zinc finger
protein PAG-3 protein.
Length = 336
Score = 50.4 bits (115), Expect = 9e-07
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = -3
Query: 292 CGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPAVH 113
C C K F + L+TH + + RP+ + KH +H G +P H
Sbjct: 156 CKQCGKTFKRSSTLSTHLLIHSD-TRPYPCEYCGKRFHQKSDMKKHTY-IHTGEKP---H 210
Query: 112 VCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
C CGKAF +SS++ R +G KPF+C+VC
Sbjct: 211 KCTVCGKAFSQSSNLITHTR--KHTGFKPFACDVC 243
Score = 36.3 bits (80), Expect = 0.015
Identities = 28/94 (29%), Positives = 35/94 (37%)
Frame = -3
Query: 292 CGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPAVH 113
C C K FST AL H+ V + L H+ +H RP +
Sbjct: 128 CQKCTKLFSTIAALEQHQQVHVSD-KQFECKQCGKTFKRSSTLSTHL-LIHSDTRP---Y 182
Query: 112 VCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
C CGK F S + +GEKP C VC
Sbjct: 183 PCEYCGKRFHQKS-DMKKHTYIHTGEKPHKCTVC 215
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/58 (27%), Positives = 21/58 (36%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRP 125
H+C C K FS + L TH + G +P +H R H G P
Sbjct: 210 HKCTVCGKAFSQSSNLITHTR-KHTGFKPFACDVCGRTFQRKVDRRRH-RESHHPGHP 265
>U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical
protein F47E1.3 protein.
Length = 594
Score = 48.8 bits (111), Expect = 3e-06
Identities = 36/111 (32%), Positives = 47/111 (42%)
Frame = -3
Query: 358 QIYTDQPLLPRRVVKLVSLRHRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXX 179
+ Y D+ L R V + + C C++ F L H E RPH
Sbjct: 475 EYYRDKHLKYTRCVDNGNRKFPCTICNRSFEKRDRLRIHILHVHENHRPHVCSVCQKSFS 534
Query: 178 XXXXLHKHVRAVHRGGRPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPF 26
L+KH+R VH G RP + C C KAF +SS+ SGEKPF
Sbjct: 535 QSSSLNKHLR-VHSGERP---YKCSFCPKAFTASSIL-RTHVRQHSGEKPF 580
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -3
Query: 157 HVRAVHRGGRPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
H+ VH RP HVC C K+F SS ++ SGE+P+ C C
Sbjct: 513 HILHVHENHRP---HVCSVCQKSFSQSSSLNK-HLRVHSGERPYKCSFC 557
>AC006625-13|ABI18147.1| 273|Caenorhabditis elegans Abnormal
chemotaxis protein 1,isoform b protein.
Length = 273
Score = 47.2 bits (107), Expect = 8e-06
Identities = 32/95 (33%), Positives = 39/95 (41%)
Frame = -3
Query: 295 RCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPAV 116
RC TC K FS A L H+ + G +P L H R H G RP
Sbjct: 167 RCQTCGKAFSQAANLTAHKRIH-TGEKPFMCPVCNRPFSQSSSLVTH-RRTHTGERP--- 221
Query: 115 HVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
+ C C KAF SS T +G KP+ C +C
Sbjct: 222 YPCAQCEKAFTDSS-TLTKHLRTHTGHKPYVCSIC 255
>AC006625-12|AAK68272.2| 214|Caenorhabditis elegans Abnormal
chemotaxis protein 1,isoform a protein.
Length = 214
Score = 47.2 bits (107), Expect = 8e-06
Identities = 32/95 (33%), Positives = 39/95 (41%)
Frame = -3
Query: 295 RCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPAV 116
RC TC K FS A L H+ + G +P L H R H G RP
Sbjct: 108 RCQTCGKAFSQAANLTAHKRIH-TGEKPFMCPVCNRPFSQSSSLVTH-RRTHTGERP--- 162
Query: 115 HVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
+ C C KAF SS T +G KP+ C +C
Sbjct: 163 YPCAQCEKAFTDSS-TLTKHLRTHTGHKPYVCSIC 196
>Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical
protein F25D7.3 protein.
Length = 817
Score = 46.4 bits (105), Expect = 1e-05
Identities = 32/99 (32%), Positives = 41/99 (41%)
Frame = -3
Query: 301 RHRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPP 122
R+ C C+K F L H G RP L KH VH G RP
Sbjct: 507 RYACKDCNKTFGQLSNLKVHVRTHT-GERPFKCEICTKEFTQLAHLQKH-HLVHTGERP- 563
Query: 121 AVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVCFA 5
H C C K F S+S + +G+KP++C+VC A
Sbjct: 564 --HRCDICDKRFSSTSNL-KTHLRLHNGQKPYTCDVCDA 599
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/75 (36%), Positives = 34/75 (45%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
HRC CDKRFS+ L TH + G +P+ L H R +H RP
Sbjct: 564 HRCDICDKRFSSTSNLKTHLRLH-NGQKPYTCDVCDAKFTQYVHLRLHKR-LHANERP-- 619
Query: 118 VHVCHTCGKAFRSSS 74
+ C TCGK + S S
Sbjct: 620 -YSCGTCGKKYISPS 633
>AC024826-17|AAF60789.1| 662|Caenorhabditis elegans Hypothetical
protein Y55F3AM.14 protein.
Length = 662
Score = 46.4 bits (105), Expect = 1e-05
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Frame = -3
Query: 295 RCGTCDKRFSTAGALATH-RAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
RC C K F+ L H + V + R H L HVR H G RP
Sbjct: 217 RCDFCPKTFALKNYLKLHVKQVHEQNERKHVCVYCNKGFAYAGSLQVHVRT-HTGERP-- 273
Query: 118 VHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
+VC C KAF S + +GE+P+SC+ C
Sbjct: 274 -YVCKFCPKAFASQGNL-QSHERTHTGERPYSCQFC 307
Score = 40.7 bits (91), Expect = 7e-04
Identities = 26/96 (27%), Positives = 41/96 (42%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
++C CDK S+ AL TH+ + G + L HV+ VH +
Sbjct: 189 YKCPKCDKLLSSPSALYTHK--KTHGDKTFRCDFCPKTFALKNYLKLHVKQVHE--QNER 244
Query: 118 VHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
HVC C K F + + + +GE+P+ C+ C
Sbjct: 245 KHVCVYCNKGFAYAG-SLQVHVRTHTGERPYVCKFC 279
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3
Query: 133 GRPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
G+P H+C CGK F S+ E + +GEKP++C C
Sbjct: 98 GQPEKRHICTVCGKGFSYFSIL-ESHKRSHTGEKPYNCHFC 137
Score = 34.7 bits (76), Expect = 0.047
Identities = 26/97 (26%), Positives = 33/97 (34%)
Frame = -3
Query: 301 RHRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPP 122
RH C C K FS L +H+ G +P+ L H R H G RP
Sbjct: 103 RHICTVCGKGFSYFSILESHKR-SHTGEKPYNCHFCQKTFAQKATLQVHER-THTGERP- 159
Query: 121 AVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
+ C C K F A G + + C C
Sbjct: 160 --YKCRYCEKTFAQYGTKTVHEKSAHLGIRNYKCPKC 194
Score = 32.3 bits (70), Expect = 0.25
Identities = 23/76 (30%), Positives = 30/76 (39%)
Frame = -3
Query: 301 RHRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPP 122
+H C C+K F+ AG+L H G RP+ L H R H G RP
Sbjct: 245 KHVCVYCNKGFAYAGSLQVHVRTH-TGERPYVCKFCPKAFASQGNLQSHER-THTGERP- 301
Query: 121 AVHVCHTCGKAFRSSS 74
+ C C + F S
Sbjct: 302 --YSCQFCQRTFIQKS 315
>AC024812-7|AAF59548.2| 419|Caenorhabditis elegans Hypothetical
protein Y54E10BR.8 protein.
Length = 419
Score = 44.4 bits (100), Expect = 6e-05
Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Frame = -3
Query: 301 RHRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPP 122
R C C + F L HR G +P L H+R +H G RP
Sbjct: 248 RFSCDRCSRTFKYQSKLDEHRRTHL-GVKPFQCHYCTRQFSQRGALKTHMR-LHTGERP- 304
Query: 121 AVHVCH-TCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
VC CGK F SSS SGE+P+ C VC
Sbjct: 305 --FVCQWECGKQFASSSAKSH-HEKTHSGERPYICNVC 339
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/74 (31%), Positives = 32/74 (43%)
Frame = -3
Query: 295 RCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPAV 116
+C C ++FS GAL TH + G RP H H G RP
Sbjct: 278 QCHYCTRQFSQRGALKTHMRLH-TGERPFVCQWECGKQFASSSAKSHHEKTHSGERP--- 333
Query: 115 HVCHTCGKAFRSSS 74
++C+ CGK+F +S
Sbjct: 334 YICNVCGKSFTKNS 347
>U23454-9|AAC46522.2| 249|Caenorhabditis elegans Hypothetical
protein C10A4.8 protein.
Length = 249
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/76 (31%), Positives = 34/76 (44%)
Frame = -3
Query: 301 RHRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPP 122
++RC CDK FS + L TH+ + G +P L +H R H +P
Sbjct: 167 KYRCDVCDKTFSRSNTLITHKRIH-TGEKPFKCEHCGRAFRQPGNLTRH-RLTHTTVKP- 223
Query: 121 AVHVCHTCGKAFRSSS 74
+VC C KAF +S
Sbjct: 224 --YVCGLCDKAFNRAS 237
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 109 CHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
C C K F RS+++ R +GEKPF CE C
Sbjct: 170 CDVCDKTFSRSNTLITHKRIH--TGEKPFKCEHC 201
>Z82090-4|CAB05008.2| 543|Caenorhabditis elegans Hypothetical
protein ZK337.2 protein.
Length = 543
Score = 39.1 bits (87), Expect = 0.002
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Frame = -3
Query: 364 FPQIYTDQPLLPRR-VVKLVSLRHRCGTCDKRFSTAGALATHRAVRX--------EGARP 212
FP+ D PR + +++ C C + F+ LA H A R + ++
Sbjct: 309 FPRSKDDMTFAPRDDSSRAKQMQYPCTLCGQAFAVHDRLAKHIASRHRQRSCTLDDASKV 368
Query: 211 HXXXXXXXXXXXXXXLHKHVRAVHRGGRPPAVHVCHTCGKAF-RSSSVTDEPRADASSGE 35
H L +H+R +H G +P + C TC + F RS ++ R +GE
Sbjct: 369 HKCNMCSKSFSRSDMLTRHMR-LHTGAKP---YSCPTCNQVFSRSDHLSTHLRTH--TGE 422
Query: 34 KPFSCEVC 11
KP++C +C
Sbjct: 423 KPYACPMC 430
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
H+C C K FS + L H + GA+P+ L H+R H G +P A
Sbjct: 369 HKCNMCSKSFSRSDMLTRHMRLH-TGAKPYSCPTCNQVFSRSDHLSTHLR-THTGEKPYA 426
Query: 118 VHVCH 104
+C+
Sbjct: 427 CPMCN 431
>Z69883-6|CAA93744.2| 461|Caenorhabditis elegans Hypothetical
protein C27C12.2 protein.
Length = 461
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -3
Query: 160 KHVRAVHRGGRPPAVHVCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
+H+R +H G +P C C +AF RS +T R +GEKPFSC++C
Sbjct: 393 RHIR-IHTGQKP---FQCRICMRAFSRSDHLTTHVRTH--TGEKPFSCDIC 437
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/69 (30%), Positives = 27/69 (39%)
Frame = -3
Query: 283 CDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPAVHVCH 104
CD+RFS + L H + G +P L HVR H G +P C
Sbjct: 381 CDRRFSRSDELTRHIRIH-TGQKPFQCRICMRAFSRSDHLTTHVR-THTGEKP---FSCD 435
Query: 103 TCGKAFRSS 77
CG+ F S
Sbjct: 436 ICGRKFARS 444
>U61955-7|AAV58862.1| 456|Caenorhabditis elegans Hypothetical
protein M03D4.4b protein.
Length = 456
Score = 36.3 bits (80), Expect = 0.015
Identities = 30/96 (31%), Positives = 36/96 (37%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
H C C K F T L H + G R H L +H+ +H GGRP
Sbjct: 67 HSCTQCGKEFGTRQLLKKH-WMWHTGERSHVCPHCNKAFFQKGHLTQHL-MIHSGGRP-- 122
Query: 118 VHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
H C C K F D R E+ FSC+ C
Sbjct: 123 -HECPQCHKTFIFK--FDLNRHMKIHQERGFSCQQC 155
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/79 (26%), Positives = 30/79 (37%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
H C C+K F G L H + G RPH L++H++ G
Sbjct: 95 HVCPHCNKAFFQKGHLTQHLMIH-SGGRPHECPQCHKTFIFKFDLNRHMKIHQERG---- 149
Query: 118 VHVCHTCGKAFRSSSVTDE 62
C CG++F + DE
Sbjct: 150 -FSCQQCGRSFLKQVMLDE 167
>U61955-6|AAC24408.2| 505|Caenorhabditis elegans Hypothetical
protein M03D4.4a protein.
Length = 505
Score = 36.3 bits (80), Expect = 0.015
Identities = 30/96 (31%), Positives = 36/96 (37%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
H C C K F T L H + G R H L +H+ +H GGRP
Sbjct: 116 HSCTQCGKEFGTRQLLKKH-WMWHTGERSHVCPHCNKAFFQKGHLTQHL-MIHSGGRP-- 171
Query: 118 VHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
H C C K F D R E+ FSC+ C
Sbjct: 172 -HECPQCHKTFIFK--FDLNRHMKIHQERGFSCQQC 204
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/79 (26%), Positives = 30/79 (37%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
H C C+K F G L H + G RPH L++H++ G
Sbjct: 144 HVCPHCNKAFFQKGHLTQHLMIH-SGGRPHECPQCHKTFIFKFDLNRHMKIHQERG---- 198
Query: 118 VHVCHTCGKAFRSSSVTDE 62
C CG++F + DE
Sbjct: 199 -FSCQQCGRSFLKQVMLDE 216
>Z83228-4|CAB05735.2| 318|Caenorhabditis elegans Hypothetical
protein F52F12.4 protein.
Length = 318
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
H+C C+K F L H + + +P+ + +H R VH G P
Sbjct: 37 HQCNVCNKMFMNYKGLQQHSVIHTD-TKPYICDVCGRGFRYKSNMFEH-RTVHTGYTP-- 92
Query: 118 VHVCHTCGKAFR 83
+VC CGK FR
Sbjct: 93 -YVCPFCGKQFR 103
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 127 PPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
P AVH C+ C K F + + + + KP+ C+VC
Sbjct: 33 PFAVHQCNVCNKMFMNYKGLQQ-HSVIHTDTKPYICDVC 70
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 145 VHRGGRPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
+H +P ++C CG+ FR S E R +G P+ C C
Sbjct: 58 IHTDTKP---YICDVCGRGFRYKSNMFEHRT-VHTGYTPYVCPFC 98
>Z83115-7|CAJ85758.1| 318|Caenorhabditis elegans Hypothetical
protein K11D2.4b protein.
Length = 318
Score = 35.9 bits (79), Expect = 0.020
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Frame = -3
Query: 370 QSFPQIYTDQPLLPRRVVKLVSLR-HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXX 194
Q P+ + L R + + +R H C C KRF G L H + + +
Sbjct: 82 QYCPKKVNSEAALERHMSECRMIRPHECDRCGKRFKARGGLQQHMRIH-NNEKAYVCTFC 140
Query: 193 XXXXXXXXXLHKHVRAVHRGGRPPAVHVCHTCGKAFRSSS 74
L +H R +H G +P +C CG++FR S
Sbjct: 141 AKSFTQKSHLDQHER-IHTGVKP---FLCAFCGRSFRQRS 176
>Z83115-6|CAB05558.1| 384|Caenorhabditis elegans Hypothetical
protein K11D2.4a protein.
Length = 384
Score = 35.9 bits (79), Expect = 0.020
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Frame = -3
Query: 370 QSFPQIYTDQPLLPRRVVKLVSLR-HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXX 194
Q P+ + L R + + +R H C C KRF G L H + + +
Sbjct: 148 QYCPKKVNSEAALERHMSECRMIRPHECDRCGKRFKARGGLQQHMRIH-NNEKAYVCTFC 206
Query: 193 XXXXXXXXXLHKHVRAVHRGGRPPAVHVCHTCGKAFRSSS 74
L +H R +H G +P +C CG++FR S
Sbjct: 207 AKSFTQKSHLDQHER-IHTGVKP---FLCAFCGRSFRQRS 242
>Z81137-12|CAJ85772.1| 318|Caenorhabditis elegans Hypothetical
protein K11D2.4b protein.
Length = 318
Score = 35.9 bits (79), Expect = 0.020
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Frame = -3
Query: 370 QSFPQIYTDQPLLPRRVVKLVSLR-HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXX 194
Q P+ + L R + + +R H C C KRF G L H + + +
Sbjct: 82 QYCPKKVNSEAALERHMSECRMIRPHECDRCGKRFKARGGLQQHMRIH-NNEKAYVCTFC 140
Query: 193 XXXXXXXXXLHKHVRAVHRGGRPPAVHVCHTCGKAFRSSS 74
L +H R +H G +P +C CG++FR S
Sbjct: 141 AKSFTQKSHLDQHER-IHTGVKP---FLCAFCGRSFRQRS 176
>Z81137-11|CAB03472.1| 384|Caenorhabditis elegans Hypothetical
protein K11D2.4a protein.
Length = 384
Score = 35.9 bits (79), Expect = 0.020
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Frame = -3
Query: 370 QSFPQIYTDQPLLPRRVVKLVSLR-HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXX 194
Q P+ + L R + + +R H C C KRF G L H + + +
Sbjct: 148 QYCPKKVNSEAALERHMSECRMIRPHECDRCGKRFKARGGLQQHMRIH-NNEKAYVCTFC 206
Query: 193 XXXXXXXXXLHKHVRAVHRGGRPPAVHVCHTCGKAFRSSS 74
L +H R +H G +P +C CG++FR S
Sbjct: 207 AKSFTQKSHLDQHER-IHTGVKP---FLCAFCGRSFRQRS 242
>AL132860-29|CAB60505.2| 386|Caenorhabditis elegans Hypothetical
protein Y56A3A.28 protein.
Length = 386
Score = 35.9 bits (79), Expect = 0.020
Identities = 24/87 (27%), Positives = 38/87 (43%)
Frame = -3
Query: 271 FSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPAVHVCHTCGK 92
F +G + A + +G++P H R +H G +P + C CGK
Sbjct: 189 FIPSGTVVGAPANQDDGSKPKMECPTCGLVLYRHNFAAHFR-IHTGEQP---YGCDYCGK 244
Query: 91 AFRSSSVTDEPRADASSGEKPFSCEVC 11
FR++S + A +GEKP+ C C
Sbjct: 245 RFRTTSSLKVHKR-AHTGEKPYVCPSC 270
>AL021483-7|CAA16344.3| 218|Caenorhabditis elegans Hypothetical
protein Y38H8A.5 protein.
Length = 218
Score = 35.5 bits (78), Expect = 0.027
Identities = 27/109 (24%), Positives = 39/109 (35%)
Frame = -3
Query: 337 LLPRRVVKLVSLRHRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHK 158
L +++ S H+C TC K F+ + L TH + +G +P
Sbjct: 95 LCRHKIIHTDSKPHKCKTCGKCFNRSSTLNTHVRIH-QGFKPFVCEICGKGFHQNGNYKN 153
Query: 157 HVRAVHRGGRPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
H R H + C C +AF S KPF+C VC
Sbjct: 154 H-RLTHEDTKK---FSCSICSRAFH-QSYNLAFHMFTHEEHKPFTCHVC 197
Score = 34.3 bits (75), Expect = 0.063
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 145 VHRGGRPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
VH G RP VC CGKAFR +S + + KP C+ C
Sbjct: 73 VHTGERP---FVCKVCGKAFRQASTLCRHKI-IHTDSKPHKCKTC 113
>AF003137-3|AAB93640.1| 625|Caenorhabditis elegans Hypothetical
protein C27A12.2 protein.
Length = 625
Score = 34.7 bits (76), Expect = 0.047
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 130 RPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
+ P +H C CG+ + S +GEKPF CE+C
Sbjct: 446 KKPTLHKCEYCGRVDKYPSKI-RAHMRTHTGEKPFKCEIC 484
>AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform b protein.
Length = 339
Score = 34.3 bits (75), Expect = 0.063
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 127 PPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
P AVH C+ C K F S + A + +KPF C++C
Sbjct: 48 PRAVHQCNVCNKIFVSYKGLQQ-HAVIHTDQKPFRCDIC 85
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
H+C C+K F + L H + + +P L +H R+VH G P
Sbjct: 52 HQCNVCNKIFVSYKGLQQHAVIHTD-QKPFRCDICSKSFRFKSNLFEH-RSVHTGFTP-- 107
Query: 118 VHVCHTCGKAFR 83
H C CGK R
Sbjct: 108 -HACPYCGKTCR 118
>AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform a protein.
Length = 365
Score = 34.3 bits (75), Expect = 0.063
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 127 PPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
P AVH C+ C K F S + A + +KPF C++C
Sbjct: 74 PRAVHQCNVCNKIFVSYKGLQQ-HAVIHTDQKPFRCDIC 111
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
H+C C+K F + L H + + +P L +H R+VH G P
Sbjct: 78 HQCNVCNKIFVSYKGLQQHAVIHTD-QKPFRCDICSKSFRFKSNLFEH-RSVHTGFTP-- 133
Query: 118 VHVCHTCGKAFR 83
H C CGK R
Sbjct: 134 -HACPYCGKTCR 144
>U70850-3|AAB09122.3| 596|Caenorhabditis elegans Zinc finger plus
homeodomain, axonguidance protein 1 protein.
Length = 596
Score = 33.9 bits (74), Expect = 0.083
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 142 HRGGRPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
H G RP + C C KAF+ E + SGEKPF C+ C
Sbjct: 503 HSGQRP---YKCDICEKAFKHKHHLTEHKR-LHSGEKPFQCDKC 542
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 109 CHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
C C KAF+ E SGEKPF C+ C
Sbjct: 26 CPECTKAFKFKHHLKE-HIRIHSGEKPFECQQC 57
>AY289599-1|AAP43944.1| 596|Caenorhabditis elegans ZAG-1 protein.
Length = 596
Score = 33.9 bits (74), Expect = 0.083
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 142 HRGGRPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
H G RP + C C KAF+ E + SGEKPF C+ C
Sbjct: 503 HSGQRP---YKCDICEKAFKHKHHLTEHKR-LHSGEKPFQCDKC 542
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 109 CHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
C C KAF+ E SGEKPF C+ C
Sbjct: 26 CPECTKAFKFKHHLKE-HIRIHSGEKPFECQQC 57
>AY224511-1|AAP37457.1| 596|Caenorhabditis elegans ZAG-1 protein.
Length = 596
Score = 33.9 bits (74), Expect = 0.083
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 142 HRGGRPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
H G RP + C C KAF+ E + SGEKPF C+ C
Sbjct: 503 HSGQRP---YKCDICEKAFKHKHHLTEHKR-LHSGEKPFQCDKC 542
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 109 CHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
C C KAF+ E SGEKPF C+ C
Sbjct: 26 CPECTKAFKFKHHLKE-HIRIHSGEKPFECQQC 57
>U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defective
protein 9, isoformd protein.
Length = 452
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 112 VCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
+C TCGKAFR S E R+ + KP+ C+ C
Sbjct: 66 ICETCGKAFRFRSNLAEHRS-VHTALKPYVCKFC 98
>U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defective
protein 9, isoformc protein.
Length = 537
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 112 VCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
+C TCGKAFR S E R+ + KP+ C+ C
Sbjct: 49 ICETCGKAFRFRSNLAEHRS-VHTALKPYVCKFC 81
>AF000194-1|AAK39376.4| 386|Caenorhabditis elegans Hypothetical
protein ZC328.2 protein.
Length = 386
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -3
Query: 133 GRPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
G P + C C K FR + +GEKPF CE C
Sbjct: 241 GSAPGQYYCFICEKDFRRPDILSR-HTRRHTGEKPFKCEDC 280
>AF003137-2|AAB93641.2| 464|Caenorhabditis elegans Temporarily
assigned gene nameprotein 146 protein.
Length = 464
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 124 PAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
P V C CG A + S E +GEKP+ C++C
Sbjct: 54 PTVTTCEVCGVALKYPSRIME-HMRTHTGEKPYECDIC 90
Score = 30.7 bits (66), Expect = 0.77
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 157 HVRAVHRGGRPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEV 14
H+R +H G RP CG +F + SV E +G K ++C V
Sbjct: 325 HIRRMHTGERP--FECTWRCGLSFVTDSVRKEHEMTVHTGIKRYTCVV 370
>Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical
protein F15C11.1 protein.
Length = 744
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 115 HVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
H C C K F SSS + +G+KPF C++C
Sbjct: 589 HQCGVCFKHFSSSSAL-QIHMRTHTGDKPFKCDMC 622
Score = 30.7 bits (66), Expect = 0.77
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 331 PRRVVKLVSLRHRCGTCDKRFSTAGALATH 242
P R + ++S +H+CG C K FS++ AL H
Sbjct: 579 PPRQMPVLS-KHQCGVCFKHFSSSSALQIH 607
>U67951-2|AAB07570.2| 302|Caenorhabditis elegans Regulator of
fusion protein 2,isoform a protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 157 HVRAVHRGGRPPAVHVCHTCGKAF-RSSSVTDEPRADASSGEKPFSC 20
H+R VH G RP +C C K F RS ++ R SGEKPF C
Sbjct: 129 HMR-VHTGERP---FLCDVCNKVFARSENLKIHKRIH--SGEKPFQC 169
>U67951-1|AAQ65207.1| 315|Caenorhabditis elegans Regulator of
fusion protein 2,isoform b protein.
Length = 315
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 157 HVRAVHRGGRPPAVHVCHTCGKAF-RSSSVTDEPRADASSGEKPFSC 20
H+R VH G RP +C C K F RS ++ R SGEKPF C
Sbjct: 142 HMR-VHTGERP---FLCDVCNKVFARSENLKIHKRIH--SGEKPFQC 182
>U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short form
protein.
Length = 715
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 115 HVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
H C C K F SSS + +G+KPF C++C
Sbjct: 560 HQCGVCFKHFSSSSAL-QIHMRTHTGDKPFKCDMC 593
Score = 30.7 bits (66), Expect = 0.77
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 331 PRRVVKLVSLRHRCGTCDKRFSTAGALATH 242
P R + ++S +H+CG C K FS++ AL H
Sbjct: 550 PPRQMPVLS-KHQCGVCFKHFSSSSALQIH 578
>U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form
protein.
Length = 744
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 115 HVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
H C C K F SSS + +G+KPF C++C
Sbjct: 589 HQCGVCFKHFSSSSAL-QIHMRTHTGDKPFKCDMC 622
Score = 30.7 bits (66), Expect = 0.77
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 331 PRRVVKLVSLRHRCGTCDKRFSTAGALATH 242
P R + ++S +H+CG C K FS++ AL H
Sbjct: 579 PPRQMPVLS-KHQCGVCFKHFSSSSALQIH 607
>AY115477-1|AAM55473.1| 303|Caenorhabditis elegans zinc finger
protein REF-2 protein.
Length = 303
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 157 HVRAVHRGGRPPAVHVCHTCGKAF-RSSSVTDEPRADASSGEKPFSC 20
H+R VH G RP +C C K F RS ++ R SGEKPF C
Sbjct: 130 HMR-VHTGERP---FLCDVCNKVFARSENLKIHKRIH--SGEKPFQC 170
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 32.3 bits (70), Expect = 0.25
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Frame = -3
Query: 361 PQIYTDQPLLPRRVVKLVSLRH--RCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXX 188
P D + R + S +H C C KRF+T AL+TH+A +
Sbjct: 216 PDAKNDPNVTAVRYISAESPKHPYACIECGKRFTTVTALSTHKARVHSQSNRFECTICHK 275
Query: 187 XXXXXXXLHKHVRAVHRGGRP 125
L KH++ VH P
Sbjct: 276 SYPVPSELRKHIKRVHEKDAP 296
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/39 (28%), Positives = 16/39 (41%)
Frame = -3
Query: 127 PPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
P + C CGK F + + +A S F C +C
Sbjct: 235 PKHPYACIECGKRFTTVTALSTHKARVHSQSNRFECTIC 273
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 32.3 bits (70), Expect = 0.25
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Frame = -3
Query: 361 PQIYTDQPLLPRRVVKLVSLRH--RCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXX 188
P D + R + S +H C C KRF+T AL+TH+A +
Sbjct: 334 PDAKNDPNVTAVRYISAESPKHPYACIECGKRFTTVTALSTHKARVHSQSNRFECTICHK 393
Query: 187 XXXXXXXLHKHVRAVHRGGRP 125
L KH++ VH P
Sbjct: 394 SYPVPSELRKHIKRVHEKDAP 414
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/39 (28%), Positives = 16/39 (41%)
Frame = -3
Query: 127 PPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
P + C CGK F + + +A S F C +C
Sbjct: 353 PKHPYACIECGKRFTTVTALSTHKARVHSQSNRFECTIC 391
>AF045645-3|AAC02610.2| 193|Caenorhabditis elegans Hypothetical
protein K02D7.2 protein.
Length = 193
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 112 VCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
VC+ CGK+F + + +GEKPF CE C
Sbjct: 97 VCNDCGKSFSRPWLL-KGHLRTHTGEKPFGCEFC 129
Score = 27.5 bits (58), Expect = 7.2
Identities = 26/98 (26%), Positives = 33/98 (33%)
Frame = -3
Query: 304 LRHRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRP 125
L+ C C K + + GAL H + P L H+R H G +P
Sbjct: 68 LQQSCPHCKKVYRSPGALKMHLKTH---SLPCVCNDCGKSFSRPWLLKGHLR-THTGEKP 123
Query: 124 PAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
C CG+ F S SGEK C C
Sbjct: 124 ---FGCEFCGRCFADRS-NLRAHLQTHSGEKKHRCSRC 157
>AL034392-4|CAA22307.2| 203|Caenorhabditis elegans Hypothetical
protein Y40B1A.4 protein.
Length = 203
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 139 RGGRPPAVHVCHTCGKAF-RSSSVTDEPRADASSGEKPFSCE 17
+G +H+CH C K + ++S + R A G KPF+C+
Sbjct: 99 QGDGKSRIHICHLCNKTYGKTSHLRAHLRGHA--GNKPFACD 138
>U10438-3|AAA19082.2| 242|Caenorhabditis elegans Drosophila
odd-skipped-like protein1 protein.
Length = 242
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 109 CHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
C TCGK+F R + D A EKP CE+C
Sbjct: 158 CETCGKSFRRQDHLRDHKYIHAK--EKPHKCEIC 189
>U41020-1|AAA82331.2| 470|Caenorhabditis elegans Hypothetical
protein T27B1.2 protein.
Length = 470
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 109 CHTCGKAFRSSSVTDEPRADASSGEKPFSCEVCFA 5
C+ C F S +E + ++ +G+KPF C+ C A
Sbjct: 86 CNLCSSKFGSKMELEEHQ-NSHTGQKPFECDTCNA 119
>AC006614-2|AAF39763.1| 254|Caenorhabditis elegans Drosophila
odd-skipped-like protein2 protein.
Length = 254
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 142 HRGGRPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
H RP + C CGKAFR + + ++PF CE+C
Sbjct: 146 HTDERP---YSCDVCGKAFRRQDHLRDHKY-IHQKDRPFKCEIC 185
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 151 RAVHRGGRPPAVHVCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
R R RP +C C + F +S ++ R E+P+SC+VC
Sbjct: 112 RTTGRAARPKKEFICKYCDRHFTKSYNLLIHERTHTD--ERPYSCDVC 157
>Z36752-3|CAA85325.1| 422|Caenorhabditis elegans Hypothetical
protein F35H8.3 protein.
Length = 422
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 160 KHVRAVHRGGRPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
+H++ VH RP C CG F + + D S + FSC+ C
Sbjct: 188 RHIQEVHGDARP---FRCFNCGMRFANKTSMTHHLKDHSLLKPMFSCDYC 234
>U28736-2|AAA68307.1| 620|Caenorhabditis elegans Hypothetical
protein F26A10.2 protein.
Length = 620
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 109 CHTCGKAFRSSSVTDEPRADASSGEKPFSCEVCF 8
C CGK F S + A S ++PF C+ CF
Sbjct: 50 CKDCGKLFNSVWYLKQ-HAVKHSNDRPFKCKFCF 82
>Z81547-1|CAB04459.1| 354|Caenorhabditis elegans Hypothetical
protein F53F8.1 protein.
Length = 354
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 118 VHVC--HTCGKAF-RSSSVTDEPRADASSGEKPFSCE 17
VH C CGK + +SS +T R SGEKP+ CE
Sbjct: 252 VHKCFYQGCGKVYTKSSHLTAHERVH--SGEKPYPCE 286
>Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical
protein R53.3a protein.
Length = 543
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATH 242
H+CG C K FS+A L H
Sbjct: 159 HKCGVCPKSFSSASGLKQH 177
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 127 PPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
P H C C K+F S+S + + KPF C +C
Sbjct: 155 PDGSHKCGVCPKSFSSASGLKQ-HSHIHCSLKPFRCHLC 192
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 115 HVCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
+ C C K F RS+++T R +GE+P+ C+ C
Sbjct: 444 YTCKFCQKVFPRSANLTRHLRTH--TGEQPYKCQYC 477
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +3
Query: 171 EAEARAAPHSAQAWGRAPSCRTARCVASAPAVLNRLSHVPHLCLRETSFTTRRGSNGW 344
E EA + +A T CV +AP + N + H+ + E F R N W
Sbjct: 8 EQEASSLRRTALVGVAVSFTATLVCVIAAPMLYNYMQHMQSVMQSEVDFCRSRSGNIW 65
>S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein.
Length = 581
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATH 242
H+CG C K FS+A L H
Sbjct: 159 HKCGVCPKSFSSASGLKQH 177
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 127 PPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
P H C C K+F S+S + + KPF C +C
Sbjct: 155 PDGSHKCGVCPKSFSSASGLKQ-HSHIHCSLKPFRCHLC 192
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 115 HVCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
+ C C K F RS+++T R +GE+P+ C+ C
Sbjct: 444 YTCKFCQKVFPRSANLTRHLRTH--TGEQPYKCQYC 477
>AC026301-1|AAK68897.1| 280|Caenorhabditis elegans Hypothetical
protein Y54F10BM.6 protein.
Length = 280
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 109 CHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
C TC K + S V+ PR ++ G SCE C
Sbjct: 146 CQTCRKKYSSQDVSRTPRVYSTCGHT--SCEAC 176
>AF125451-2|AAP82633.1| 167|Caenorhabditis elegans Hypothetical
protein Y37E11B.1b protein.
Length = 167
Score = 28.7 bits (61), Expect = 3.1
Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Frame = -3
Query: 292 CGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPAVH 113
C TC KRF A L H+ V + L KH R R
Sbjct: 43 CSTCQKRFHNAELLRKHQIVHDIPKKSIICEVCGKKYSSKSALAKHKRTHETDKR----- 97
Query: 112 VCHTCGKAFRSSSVTDEPRADASSGE--KPFSCEVCF 8
TC + S ++D + + KPF C CF
Sbjct: 98 --FTCPMCYASFDLSDPFKIHLRKHDNLKPFGCSYCF 132
>Z79603-2|CAB01893.4| 500|Caenorhabditis elegans Hypothetical
protein M163.2 protein.
Length = 500
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 151 RAVHRGGRPPAVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCE 17
R H G +P +V + C K+F ++S + S EKP+ C+
Sbjct: 310 RRTHTGEKPYHCNVPN-CNKSFTNASDRSKHSKRTHSNEKPYCCD 353
>Z66515-3|CAA91352.1| 322|Caenorhabditis elegans Hypothetical
protein R53.3b protein.
Length = 322
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 115 HVCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
+ C C K F RS+++T R +GE+P+ C+ C
Sbjct: 223 YTCKFCQKVFPRSANLTRHLRTH--TGEQPYKCQYC 256
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 234 TARCVASAPAVLNRLSHVPHLCLRETSFTTRRGSNGW 344
T CV +AP + N + H+ + E F R N W
Sbjct: 29 TLVCVIAAPMLYNYMQHMQSVMQSEVDFCRSRSGNIW 65
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 234 TARCVASAPAVLNRLSHVPHLCLRETSFTTRRGSNGW 344
T CV +AP + N + H+ + E F R N W
Sbjct: 91 TLVCVIAAPMLYNYMQHMQSVMQSEVDFCRSRSGNIW 127
>U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protein
170 protein.
Length = 300
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 234 TARCVASAPAVLNRLSHVPHLCLRETSFTTRRGSNGW 344
T CV +AP + N + H+ + E F R N W
Sbjct: 29 TLVCVIAAPMLYNYMQHMQSVMQSEVDFCRSRSGNIW 65
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 234 TARCVASAPAVLNRLSHVPHLCLRETSFTTRRGSNGW 344
T CV +AP + N + H+ + E F R N W
Sbjct: 29 TLVCVIAAPILYNYMQHMQSVMQSEVDFCRSRSGNIW 65
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 234 TARCVASAPAVLNRLSHVPHLCLRETSFTTRRGSNGW 344
T CV +AP + N + H+ + E F R N W
Sbjct: 29 TLVCVIAAPMLYNYMQHMQSVMQSEVDFCRSRSGNIW 65
>S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein.
Length = 360
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 115 HVCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
+ C C K F RS+++T R +GE+P+ C+ C
Sbjct: 223 YTCKFCQKVFPRSANLTRHLRTH--TGEQPYKCQYC 256
>AF016673-3|AAB66122.2| 366|Caenorhabditis elegans Hypothetical
protein T06D4.2 protein.
Length = 366
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 252 SAPAVLNRLSHVPHLCLRETSFTTRRGS 335
S P SH+ CLR TSF RGS
Sbjct: 5 SPPPAQREYSHLKTACLRATSFVETRGS 32
>AF003144-4|AAB54197.2| 164|Caenorhabditis elegans Hypothetical
protein C55C2.1 protein.
Length = 164
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 46 SSGEKPFSCEVC 11
S+GEKPF CE+C
Sbjct: 102 SAGEKPFQCEIC 113
>AF003142-5|ABQ13067.1| 474|Caenorhabditis elegans Hypothetical
protein F57C9.4c protein.
Length = 474
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 121 AVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
+V C CGK R + + R +GE+P+ C+ C
Sbjct: 391 SVFACEHCGKRGRRNFLKTHIRTH--TGERPYRCDTC 425
>AF003142-4|AAK73888.1| 856|Caenorhabditis elegans Hypothetical
protein F57C9.4b protein.
Length = 856
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 121 AVHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
+V C CGK R + + R +GE+P+ C+ C
Sbjct: 773 SVFACEHCGKRGRRNFLKTHIRTH--TGERPYRCDTC 807
>Z79755-8|CAB02113.1| 270|Caenorhabditis elegans Hypothetical
protein F43G9.11 protein.
Length = 270
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/91 (25%), Positives = 31/91 (34%)
Frame = -3
Query: 358 QIYTDQPLLPRRVVKLVSLRHRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXX 179
++Y P L ++ + H C C KRFS L H G RP
Sbjct: 172 RVYVSMPALSMHILTH-NASHECNVCGKRFSRLWLLQGHLR-SHTGLRPFSCAHCGKSFA 229
Query: 178 XXXXLHKHVRAVHRGGRPPAVHVCHTCGKAF 86
L H+ H G + C CG+ F
Sbjct: 230 DRSNLRAHM-LTHTGDKR---FECDKCGRRF 256
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 234 TARCVASAPAVLNRLSHVPHLCLRETSFTTRRGSNGW 344
T C+ +AP + N + H+ + E F R N W
Sbjct: 29 TLVCIIAAPMLYNYMQHMQSVMQSEVDFCRSRSGNIW 65
>U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protein
171 protein.
Length = 307
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 234 TARCVASAPAVLNRLSHVPHLCLRETSFTTRRGSNGW 344
T C+ +AP + N + H+ + E F R N W
Sbjct: 37 TLVCIIAAPMLYNYMQHMQSVMQSEVDFCRSRSGNIW 73
>AF519108-1|AAM74222.1| 909|Caenorhabditis elegans EOR-1 protein.
Length = 909
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 115 HVCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
H+C CG+ F S + R EKPF C+ C
Sbjct: 624 HLCKICGRGFIEKSHLVRHERIHLE--EKPFKCDQC 657
>AF502568-1|AAM74151.1| 909|Caenorhabditis elegans EOR-1 protein.
Length = 909
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 115 HVCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
H+C CG+ F S + R EKPF C+ C
Sbjct: 624 HLCKICGRGFIEKSHLVRHERIHLE--EKPFKCDQC 657
>AF169201-1|AAF01678.1| 270|Caenorhabditis elegans CES-1 protein.
Length = 270
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/91 (25%), Positives = 31/91 (34%)
Frame = -3
Query: 358 QIYTDQPLLPRRVVKLVSLRHRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXX 179
++Y P L ++ + H C C KRFS L H G RP
Sbjct: 172 RVYVSMPALSMHILTH-NASHECNVCGKRFSRLWLLQGHLR-SHTGLRPFSCAHCGKSFA 229
Query: 178 XXXXLHKHVRAVHRGGRPPAVHVCHTCGKAF 86
L H+ H G + C CG+ F
Sbjct: 230 DRSNLRAHM-LTHTGDKR---FECDKCGRRF 256
>AF100669-8|AAK39268.1| 909|Caenorhabditis elegans Egl-1
suppressor/dio uptake defective/raf enhancer protein 1
protein.
Length = 909
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 115 HVCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
H+C CG+ F S + R EKPF C+ C
Sbjct: 624 HLCKICGRGFIEKSHLVRHERIHLE--EKPFKCDQC 657
>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
protein C09H6.1b protein.
Length = 1309
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 115 HVCHTCGKAFRS-SSVTDEPRADASSGEKPFSCEVC 11
H CH C + S SS+ + + K F+CE+C
Sbjct: 112 HACHKCPSRYESKSSLANHTKMHLGEKRK-FACELC 146
>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
protein C09H6.1a protein.
Length = 1311
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 115 HVCHTCGKAFRS-SSVTDEPRADASSGEKPFSCEVC 11
H CH C + S SS+ + + K F+CE+C
Sbjct: 112 HACHKCPSRYESKSSLANHTKMHLGEKRK-FACELC 146
>Z81461-1|CAB03833.1| 944|Caenorhabditis elegans Hypothetical
protein C04F12.1 protein.
Length = 944
Score = 27.1 bits (57), Expect = 9.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 112 VCHTCGKAFRSSSVTDEP 59
VCH+ GK ++ + DEP
Sbjct: 674 VCHSSGKVYKKDEICDEP 691
>U80952-2|AAB38094.1| 309|Caenorhabditis elegans Muscle attachment
abnormal protein1, isoform a protein.
Length = 309
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -3
Query: 157 HVRAVHR--GGRPPAVHVCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
H++A R G P V C F RS +T R +G+KPF C +C
Sbjct: 240 HLKAHERTHSGEKPFVCKWQNCSWKFARSDELTRHMRKH--TGDKPFRCSLC 289
>U80952-1|AAU20846.1| 315|Caenorhabditis elegans Muscle attachment
abnormal protein1, isoform b protein.
Length = 315
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -3
Query: 157 HVRAVHR--GGRPPAVHVCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
H++A R G P V C F RS +T R +G+KPF C +C
Sbjct: 246 HLKAHERTHSGEKPFVCKWQNCSWKFARSDELTRHMRKH--TGDKPFRCSLC 295
>AF045642-6|AAC02590.1| 632|Caenorhabditis elegans Hypothetical
protein C17H12.12 protein.
Length = 632
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 417 DTNVPDVLSFRPRRLNNPSH 358
D V D L FR R LNNP H
Sbjct: 429 DIRVEDRLMFRVRALNNPRH 448
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 358 QIYTDQPLLPRRVVKLVSLRHRCGTCDKRFSTAGALATHRAV 233
++ T + + R L H C TC K F TA L+ H V
Sbjct: 602 RLTTARQIKEHRARHLPRKSHLCWTCHKSFRTAQLLSLHAEV 643
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,696,797
Number of Sequences: 27780
Number of extensions: 200112
Number of successful extensions: 768
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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