Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12a16
(570 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 52 4e-09
L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein pro... 35 7e-04
AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc fi... 27 0.13
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 27 0.17
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 23 1.6
L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 22 3.7
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 8.6
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 8.6
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 52.0 bits (119), Expect = 4e-09
Identities = 29/96 (30%), Positives = 44/96 (45%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
++C C++ F +G L H + G RPH L H+R H G +P
Sbjct: 148 YKCDVCERAFEHSGKLHRHMRIHT-GERPHKCTVCSKTFIQSGQLVIHMRT-HTGEKP-- 203
Query: 118 VHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
+VC CGK F S + +GEKP++C++C
Sbjct: 204 -YVCKACGKGFTCSKQL-KVHTRTHTGEKPYTCDIC 237
Score = 50.4 bits (115), Expect = 1e-08
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
++C C K FS L+ HR + + RP+ LH+H+R +H G RP
Sbjct: 120 YQCEYCSKSFSVKENLSVHRRIHTK-ERPYKCDVCERAFEHSGKLHRHMR-IHTGERP-- 175
Query: 118 VHVCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVC 11
H C C K F +S + R +GEKP+ C+ C
Sbjct: 176 -HKCTVCSKTFIQSGQLVIHMR--THTGEKPYVCKAC 209
Score = 36.7 bits (81), Expect = 2e-04
Identities = 26/96 (27%), Positives = 35/96 (36%)
Frame = -3
Query: 298 HRCGTCDKRFSTAGALATHRAVRXEGARPHXXXXXXXXXXXXXXLHKHVRAVHRGGRPPA 119
+RC C K F+ L H G +P+ L H R +H RP
Sbjct: 92 YRCNICGKTFAVPARLTRHYRTH-TGEKPYQCEYCSKSFSVKENLSVH-RRIHTKERP-- 147
Query: 118 VHVCHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
+ C C +AF S +GE+P C VC
Sbjct: 148 -YKCDVCERAFEHSGKLHR-HMRIHTGERPHKCTVC 181
Score = 32.7 bits (71), Expect = 0.003
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 157 HVRAVHRGGRPPAVHVCHTCGKAFR-SSSVTDEPRADASSGEKPFSCEVC 11
H+R+ + G P + C+ CGK F + +T R +GEKP+ CE C
Sbjct: 80 HLRSHGKEGEDP--YRCNICGKTFAVPARLTRHYRTH--TGEKPYQCEYC 125
>L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein
protein.
Length = 81
Score = 34.7 bits (76), Expect = 7e-04
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 109 CHTCGKAFRSSSVTDEPRADASSGEKPFSCEVC 11
CH CGKAF + + +GEKPFSC+ C
Sbjct: 45 CHLCGKAFSRPWLL-QGHIRTHTGEKPFSCQHC 76
>AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc
finger domain-Z3 isoform protein.
Length = 92
Score = 27.1 bits (57), Expect = 0.13
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 292 CGTCDKRFSTAGALATHRAVRXEGA 218
C C++R+ T +L TH++++ G+
Sbjct: 38 CEFCNRRYRTKNSLTTHKSLQHRGS 62
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 26.6 bits (56), Expect = 0.17
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -3
Query: 157 HVRAVHRGGRPPAVHVCHTCGKAF-RSSSVTDEPRADASSGEKPFSCEVCFA 5
H+R +H G +P + C C + F + +++ R +GE+P++CE+C A
Sbjct: 28 HMR-LHTGEKP---YHCSHCDRQFVQVANLRRHLRVH--TGERPYACELCAA 73
Score = 22.2 bits (45), Expect = 3.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 43 SGEKPFSCEVC 11
+GEKPF C C
Sbjct: 5 TGEKPFECPEC 15
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 23.4 bits (48), Expect = 1.6
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -3
Query: 379 TTKQSFPQIYTDQPLLPRRVVKLVSLRHRCGTCDKRFSTAGA 254
T KQ ++ + LLP + + S+ TC K AG+
Sbjct: 548 TNKQELKRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGS 589
>L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein
protein.
Length = 69
Score = 22.2 bits (45), Expect = 3.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 40 GEKPFSCEVC 11
G KPF CE C
Sbjct: 13 GSKPFKCEKC 22
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 8.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 105 WHTCTAGGRPP 137
W CTA G PP
Sbjct: 49 WLDCTATGSPP 59
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.0 bits (42), Expect = 8.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 105 WHTCTAGGRPP 137
W CTA G PP
Sbjct: 49 WLDCTATGSPP 59
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,577
Number of Sequences: 438
Number of extensions: 2411
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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