Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a11
         (783 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U95171-1|AAB51540.1| 1861|Drosophila melanogaster microtubule as...    31   2.3  
AE014297-3620|AAF56330.3| 1954|Drosophila melanogaster CG6875-PA...    31   2.3  
BT025196-1|ABF17887.1|  347|Drosophila melanogaster FI01126p pro...    29   9.5  
AY061602-1|AAL29150.1|  347|Drosophila melanogaster SD05726p pro...    29   9.5  
AJ749862-1|CAG44484.1|  428|Drosophila melanogaster Cabut protein.     29   9.5  
AE014134-115|AAN10498.1|  347|Drosophila melanogaster CG4427-PB,...    29   9.5  
AE014134-114|AAF51489.2|  428|Drosophila melanogaster CG4427-PA,...    29   9.5  

>U95171-1|AAB51540.1| 1861|Drosophila melanogaster microtubule
           associated protein protein.
          Length = 1861

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 544 SSNILDYFRLRGEPRTPRNKSTVPIICQHSHSVA 443
           S + LD  R+ G+P TP NK+T  +   H+ ++A
Sbjct: 225 SLDTLDCSRIDGQPHTPLNKTTTIVHATHTRALA 258


>AE014297-3620|AAF56330.3| 1954|Drosophila melanogaster CG6875-PA
           protein.
          Length = 1954

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 544 SSNILDYFRLRGEPRTPRNKSTVPIICQHSHSVA 443
           S + LD  R+ G+P TP NK+T  +   H+ ++A
Sbjct: 318 SLDTLDCSRIDGQPHTPLNKTTTIVHATHTRALA 351


>BT025196-1|ABF17887.1|  347|Drosophila melanogaster FI01126p
           protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 10  NICMIKFENKIHYSH---K*TSNTTIPLRAHYNIHNNNIYLSIIFSLCRSRIHLK 165
           ++C  KF    H S    +   +    +  H ++ NNN   S+  SLC + +HL+
Sbjct: 245 SVCQKKFMRSDHLSKHVKRHNKDKANGVNRHVSLANNNTSASVAASLCDASLHLR 299


>AY061602-1|AAL29150.1|  347|Drosophila melanogaster SD05726p
           protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 10  NICMIKFENKIHYSH---K*TSNTTIPLRAHYNIHNNNIYLSIIFSLCRSRIHLK 165
           ++C  KF    H S    +   +    +  H ++ NNN   S+  SLC + +HL+
Sbjct: 245 SVCQKKFMRSDHLSKHVKRHNKDKANGVNRHVSLANNNTSASVAASLCDASLHLR 299


>AJ749862-1|CAG44484.1|  428|Drosophila melanogaster Cabut protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 10  NICMIKFENKIHYSH---K*TSNTTIPLRAHYNIHNNNIYLSIIFSLCRSRIHLK 165
           ++C  KF    H S    +   +    +  H ++ NNN   S+  SLC + +HL+
Sbjct: 326 SVCQKKFMRSDHLSKHVKRHNKDKANGVNRHVSLANNNTSASVAASLCDASLHLR 380


>AE014134-115|AAN10498.1|  347|Drosophila melanogaster CG4427-PB,
           isoform B protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 10  NICMIKFENKIHYSH---K*TSNTTIPLRAHYNIHNNNIYLSIIFSLCRSRIHLK 165
           ++C  KF    H S    +   +    +  H ++ NNN   S+  SLC + +HL+
Sbjct: 245 SVCQKKFMRSDHLSKHVKRHNKDKANGVNRHVSLANNNTSASVAASLCDASLHLR 299


>AE014134-114|AAF51489.2|  428|Drosophila melanogaster CG4427-PA,
           isoform A protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 10  NICMIKFENKIHYSH---K*TSNTTIPLRAHYNIHNNNIYLSIIFSLCRSRIHLK 165
           ++C  KF    H S    +   +    +  H ++ NNN   S+  SLC + +HL+
Sbjct: 326 SVCQKKFMRSDHLSKHVKRHNKDKANGVNRHVSLANNNTSASVAASLCDASLHLR 380


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,384,397
Number of Sequences: 53049
Number of extensions: 593643
Number of successful extensions: 924
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)