Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a10
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1086 - 34421837-34422311,34422426-34422612,34423162-344232...    28   8.2  

>01_06_1086 -
           34421837-34422311,34422426-34422612,34423162-34423291,
           34423485-34423720,34423804-34423961,34424048-34424128,
           34424216-34424281,34424364-34424432,34424722-34424866,
           34425645-34426138,34426244-34426811,34429529-34429574
          Length = 884

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 292 LRMSNNGNIYLIFLDYMSTYWASV-LTKFDYSNRKTQKNITI 170
           LR S NG+++L  L     +W +V LTK D S+   ++ +T+
Sbjct: 105 LRSSENGSLFLFGLHIGVNFWTTVNLTKQDSSDTIWKEVLTV 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,432,496
Number of Sequences: 37544
Number of extensions: 189782
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)