Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a10
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    30   1.8  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC006774-6|AAF60619.1|  129|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF039040-4|AAB94182.1|  368|Caenorhabditis elegans Hypothetical ...    28   7.4  

>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/60 (23%), Positives = 32/60 (53%)
 Frame = -3

Query: 310  NSQPILLRMSNNGNIYLIFLDYMSTYWASVLTKFDYSNRKTQKNITIVR*YSRAITDMLL 131
            N +  +L+     +IYL++LD  + Y  ++  K  Y N + +KN+  ++   + + ++ L
Sbjct: 1004 NYEEEILKNYEEESIYLLYLDANNLYGWAMSQKLPYDNFEFEKNVNEIKDIEKYLNEIEL 1063


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 316 IVNSQPILLRMSNNGNIYLIFLDYMSTYWASVLTKFDYSNRK 191
           I+NS  +L+R S +G    I +D M T   SVL      N K
Sbjct: 103 IINSTDVLMRESGSGQDIYIVMDLMETDLLSVLKSNQTLNEK 144


>AC006774-6|AAF60619.1|  129|Caenorhabditis elegans Hypothetical
           protein Y46H3A.5 protein.
          Length = 129

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 134 KHIGNCSRISPNYCNIFLCFSIAIIKLSQNRC 229
           K  G+ ++I PN+  ++    I I++LS+N C
Sbjct: 6   KQFGHANKIKPNFFAMWKLLMIFIVQLSKNFC 37


>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical protein
            ZK970.5 protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = -3

Query: 319  IIVNSQPILLRMSNNGNIYLIFLDYMSTYWASVLTKFDYSNRKTQKNITIVR*YSRAI-- 146
            ++VN+ P     ++ G + +     M TYW  +L K   SN+ T   IT V    R I  
Sbjct: 1045 LLVNNYPYQFETNSRGEVIIKGKGVMETYW--LLGKMSLSNQSTPP-ITKVNHKPRKIAS 1101

Query: 145  -TDMLLINF 122
             TD  L N+
Sbjct: 1102 FTDSELTNY 1110


>AF039040-4|AAB94182.1|  368|Caenorhabditis elegans Hypothetical
           protein T22B11.2 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 102 YCLQKVQKFIRSISVIALEYHLTIVIFFCV 191
           +C QK  + +RS+ + A EY L+++I F +
Sbjct: 13  FCFQKNIRNLRSMRLCADEYRLSLIIVFII 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,411,982
Number of Sequences: 27780
Number of extensions: 221824
Number of successful extensions: 424
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)