Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a09
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   2.4  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   7.5  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    25   9.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   9.9  

>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 86  DFKLLCSQGENILSQLLNYIFQSNQILS 169
           D + + SQG N+L+Q LN  +Q+  I+S
Sbjct: 437 DLEEIWSQGLNLLTQPLNRFYQARDIVS 464


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 449 DIFTVHEQMFASFNFTLRPILLFY 520
           D  TVH+Q    F+F   P+  +Y
Sbjct: 24  DTITVHKQTIGKFSFKTMPLKAYY 47


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 514 VLYFRSILPNISDQIFRFETS*MLAITR*IVLKKQIKSEVFLKVVFSVIPF 666
           +LY  S+LP  S+++   ET+ + A      L K I S +      SV+P+
Sbjct: 143 LLYSASLLPRSSERLVTLETNEIDASVVIETLLKYILSRISFIPRVSVVPY 193


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 527 DQFCQTYLTKFLDLKR 574
           D+FC  YL+K+++L +
Sbjct: 110 DEFCSKYLSKYMELSK 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,828
Number of Sequences: 5004
Number of extensions: 43912
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)