Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a07
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.52 
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    29   0.69 

>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 267 FVWYETSLSYPSRNCLHF*LGMKKKMQYFCISXXXXX*FKLVFG 136
           ++ Y+T  SY   +   F  G+K+ + YFC        F+++FG
Sbjct: 28  YMLYKTYTSYFFMSSKSFVRGVKRYLIYFCYCANFIALFRVIFG 71


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 376 LSLPSTDCLCIFYHNDGIY 320
           L + +TDC C+FY+N GIY
Sbjct: 128 LDMLNTDC-CVFYNNHGIY 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,140
Number of Sequences: 5004
Number of extensions: 43199
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)