Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a07
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0555 - 10588685-10592038                                         29   2.8  
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675...    29   2.8  
10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454     28   5.0  
10_04_0010 - 7487455-7489490,7489569-7489980                           28   5.0  
03_02_1029 - 13488535-13493037                                         28   5.0  
01_07_0262 + 42378465-42378634,42379100-42379230,42379307-423794...    28   6.6  
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    27   8.7  

>09_02_0555 - 10588685-10592038
          Length = 1117

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 582 IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 469
           IH  S+++Y+++  ++W  +  R + EF+  C +C + KA
Sbjct: 698 IHSGSTKMYLNLKEKYWWVSMKREIAEFVALCDVCQRVKA 737


>08_02_0167 -
           13564466-13566227,13566361-13566644,13566684-13567540,
           13567684-13567957,13567973-13568218
          Length = 1140

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 582 IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 469
           IH  S+++Y+ +  ++W  +  R +TEF+  C +C   KA
Sbjct: 748 IHPGSTKMYLDMKEKYWWVSMKREITEFVALCEVCQHVKA 787


>10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454
          Length = 674

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 582 IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 469
           IH  S+++Y+ +  ++W  +  R + EF+  C +C + KA
Sbjct: 279 IHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKA 318


>10_04_0010 - 7487455-7489490,7489569-7489980
          Length = 815

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 582 IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 469
           IH  S+++Y+ +  ++W  +  R + EF+  C +C + KA
Sbjct: 441 IHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKA 480


>03_02_1029 - 13488535-13493037
          Length = 1500

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 582  IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 469
            IH  S+++Y+ +  ++W  +  R + EF+  C +C + KA
Sbjct: 1081 IHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKA 1120


>01_07_0262 +
           42378465-42378634,42379100-42379230,42379307-42379466,
           42379547-42379850,42379936-42380037,42380583-42380606
          Length = 296

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +1

Query: 328 RHYDRKYIDNQWREVKVKRLHYGNL*VQNRY 420
           R+ +R+ I+  W E++V  L++GN+ ++N Y
Sbjct: 53  RYINRQIIEG-WEELRVNGLYHGNICLENVY 82


>01_03_0303 +
           14792842-14792949,14793659-14793760,14794657-14794800,
           14794906-14794986,14795078-14795147,14795267-14795337,
           14795427-14795594,14796030-14796074,14796449-14796511,
           14796594-14796869,14797858-14797971,14798099-14798225,
           14798315-14798484,14798743-14798841,14799577-14799630,
           14801487-14801522,14801741-14801844,14801952-14802186,
           14802377-14802609,14802846-14803346,14803422-14803716,
           14805796-14805881,14806952-14807064,14807303-14807385,
           14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 237 DKINSFHTIQSSFVCRQLACFSQYLH 314
           + +N F TI  +F C+Q+ C+S  ++
Sbjct: 548 NSVNFFMTIVKTFKCKQIYCYSSTIY 573


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,600,230
Number of Sequences: 37544
Number of extensions: 214945
Number of successful extensions: 424
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)