Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a07
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical pr...    31   0.83 
AF047661-5|AAU05544.1|  822|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z93379-7|CAD54132.1|  188|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical
           protein T04A11.12 protein.
          Length = 327

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -3

Query: 448 LIIIM*CFVNIYFVLIDCHNGVF*LSLPS-TDCLC-IFYHNDGIYL 317
           +III+   V +Y+   D +N V+ LS  S + C+C +F+  D +YL
Sbjct: 47  IIIILRILVKLYYAFRDRNNNVYLLSAISISQCMCLLFFLADFLYL 92


>AF047661-5|AAU05544.1|  822|Caenorhabditis elegans Hypothetical
           protein M70.4 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 501 TQSNYVHLHSTKIERAQRYITHLNNNELNVLK 596
           TQ NY  L +T+ E ++ Y+THLN    N  K
Sbjct: 715 TQQNY--LINTEFETSEEYLTHLNQLVQNTKK 744


>Z93379-7|CAD54132.1|  188|Caenorhabditis elegans Hypothetical
           protein F21H7.12 protein.
          Length = 188

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 381 FNFHFPPLIVYVFSIIMTEYIFCVN 307
           F F     IVY+FSI+ + YI+CV+
Sbjct: 147 FVFSIVTCIVYLFSIVGSIYIWCVS 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,188,309
Number of Sequences: 27780
Number of extensions: 231658
Number of successful extensions: 478
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)