Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12a06
(245 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 26 0.80
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 25 1.1
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 25 1.8
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi... 24 2.4
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc... 23 4.3
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 23 4.3
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 23 4.3
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac... 23 5.6
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 23 5.6
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 23 7.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 22 9.8
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 22 9.8
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 0.80
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 227 TTRKTHVAYGSKMALGFLLITGILAFGAYWTTKYLM 120
T R V YG KMA+G L++ I+AF +Y +
Sbjct: 575 TARSKDVRYGLKMAIGIGLLS-IVAFQKSTAARYTL 609
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 1.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 161 ILAFGAYWTTKYLMSSPDNNF 99
+L F AY+ + +SPDNN+
Sbjct: 56 LLVFAAYYVLRKPRTSPDNNY 76
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 24.6 bits (51), Expect = 1.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 243 FFDYCYYKK 217
F DYCYYKK
Sbjct: 83 FVDYCYYKK 91
>SPBC146.11c |mug97|meu33|meiotically upregulated gene
Mug97|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 24.2 bits (50), Expect = 2.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 192 NGVRISTYHRYFSVWSL 142
N VR+ YH+++S W L
Sbjct: 166 NQVRVCLYHKHYSRWYL 182
>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 23.4 bits (48), Expect = 4.3
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 243 FFDYCYYKKDARSIWK*NGVRISTYHRYFSVWSLLDYEIF 124
F+D C K + ++WK + YF + +L++ IF
Sbjct: 142 FYDECLRKYGSANVWK----HFTNLFDYFPLTALIEDRIF 177
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 23.4 bits (48), Expect = 4.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 200 GSKMALGFLLITGILAF 150
GS+++LGF LIT + F
Sbjct: 407 GSQLSLGFQLITSCITF 423
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 23.4 bits (48), Expect = 4.3
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 174 TYHRYFSVWSLL 139
TYHR+FS+ SL+
Sbjct: 55 TYHRFFSILSLV 66
>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 205
Score = 23.0 bits (47), Expect = 5.6
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1
Query: 4 YLQVILNSTVLRYNSPG 54
Y+ +++ST + YN PG
Sbjct: 112 YVGTVMDSTTVMYNDPG 128
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 88 LSCRQRCPQRYHPGCYSVI 32
LSC Q+CP HP C ++
Sbjct: 221 LSC-QKCPLSIHPLCNRIL 238
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 19 LNSTVLRYNSPGGS 60
LN+ +LRY +PGG+
Sbjct: 179 LNAALLRYFNPGGA 192
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 22.2 bits (45), Expect = 9.8
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = -1
Query: 209 VAYGSKMALGFLLITGILAFGAY--WTTKYLMS 117
V Y K GF L+T L G Y W+ L++
Sbjct: 3448 VRYSLKCEKGFFLVTVTLFHGIYDGWSLDLLLN 3480
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 22.2 bits (45), Expect = 9.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 109 SGLLIKYFVVQ*APNAKIPVISRNPNAILLPYA 207
SG FV+ NA+IPV++ NA++L A
Sbjct: 314 SGAAASPFVIG-IQNAEIPVLNHIINAVILTSA 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 976,350
Number of Sequences: 5004
Number of extensions: 15884
Number of successful extensions: 35
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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