Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a06
         (245 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69787-12|CAM84810.1|  234|Caenorhabditis elegans Hypothetical p...    26   4.1  
Z69787-7|CAA93643.1|  214|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    25   5.4  
AF024503-15|AAG24087.2|  289|Caenorhabditis elegans Serpentine r...    25   7.1  
Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical ...    25   9.4  
AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.      25   9.4  

>Z69787-12|CAM84810.1|  234|Caenorhabditis elegans Hypothetical
           protein C44C10.9b protein.
          Length = 234

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 191 MALGFLLITGILAFGAYWTTKYLMSSP 111
           +AL   LI  +LA  AY+  KYL S P
Sbjct: 70  IALAIFLIALLLACLAYYLAKYLKSRP 96


>Z69787-7|CAA93643.1|  214|Caenorhabditis elegans Hypothetical
           protein C44C10.9a protein.
          Length = 214

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 191 MALGFLLITGILAFGAYWTTKYLMSSP 111
           +AL   LI  +LA  AY+  KYL S P
Sbjct: 70  IALAIFLIALLLACLAYYLAKYLKSRP 96


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 16   ILNSTVLRYNSPGGSVEDIVV 78
            ++N+ V R+  P GS+ED+++
Sbjct: 2043 LINTLVERFKIPRGSIEDVIL 2063


>AF024503-15|AAG24087.2|  289|Caenorhabditis elegans Serpentine
           receptor, class x protein22 protein.
          Length = 289

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 192 NGVRISTYHRYFSVWSLLDYEIFNE 118
           N   +S Y +YF + +++ YEI N+
Sbjct: 68  NSTPLSEYSKYFGLAAMIVYEISNQ 92


>Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical
           protein F09B12.6 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 49  PGGSVEDIVVGMTVVEEKLLSGLLIKYFVVQ*APNAKIPVISRNPNA 189
           P GSV+D++V  T+ E+  +  L+     +    N   PVI R+  A
Sbjct: 129 PRGSVKDLLVKETLGEDTAIKYLMETVEALDYLHNLSPPVIHRDIKA 175


>AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical
           protein Y55F3C.9 protein.
          Length = 711

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 118 VVLTTIFLLQLSCRQRCPQR 59
           VV+TTIF++   C   C QR
Sbjct: 66  VVITTIFMVVTKCFNFCAQR 85


>AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 49  PGGSVEDIVVGMTVVEEKLLSGLLIKYFVVQ*APNAKIPVISRNPNA 189
           P GSV+D++V  T+ E+  +  L+     +    N   PVI R+  A
Sbjct: 129 PRGSVKDLLVKETLGEDTAIKYLMETVEALDYLHNLSPPVIHRDIKA 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,382,229
Number of Sequences: 27780
Number of extensions: 87828
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)