Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12a04
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 150 2e-37
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 29 0.61
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.1
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 27 3.3
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 27 3.3
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 4.3
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.7
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 26 5.7
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.6
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 10.0
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 150 bits (364), Expect = 2e-37
Identities = 77/136 (56%), Positives = 98/136 (72%), Gaps = 1/136 (0%)
Frame = -1
Query: 676 CCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEAD-KN 500
C + T QYGWSANMERIMKAQALRDTS YM+++K EINP I+ L++K E +
Sbjct: 572 CLLTTGQYGWSANMERIMKAQALRDTSMSAYMSSRKTFEINPKSPIIAELKKKVEENGAE 631
Query: 499 DKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVP 320
D++VKDL +LYETALLSSGFTLD+P +A RI R+I LGL IDE+E +EE ++ V
Sbjct: 632 DRSVKDLATILYETALLSSGFTLDDPSAYAQRINRLISLGLSIDEEEEAPIEEISTESV- 690
Query: 319 PLEGDADDASRMEEVD 272
E +A+ S+MEEVD
Sbjct: 691 AAENNAE--SKMEEVD 704
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 29.1 bits (62), Expect = 0.61
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 355 IQVEEPASGDVPPLEGDADDASRMEEVD 272
IQ + P D PP++ DAD+ EE D
Sbjct: 157 IQWDNPDFDDAPPVQPDADEEEEEEEAD 184
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 640 NMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQK 518
N R M + L + ++A KK LE+N IV TLRQ+
Sbjct: 117 NTIRSMSSVVLASALSNNFIAQKKALEMNIMPKIVNTLRQE 157
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/82 (19%), Positives = 39/82 (47%)
Frame = -1
Query: 523 QKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVE 344
Q AE + + ++ +L+ + + + +D ++ + ++ I ED+ +VE
Sbjct: 22 QDAEENSQPELEDEVKLLISRQYEMGNIWNVDWSSMNLESLRKLTNAQNTIIEDKKRKVE 81
Query: 343 EPASGDVPPLEGDADDASRMEE 278
+P SG+ L + D+ + E+
Sbjct: 82 KPVSGNQFSLLSEEDEVDKKEK 103
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 311 LQWRHISRSRLFNLNRLIFINTKTQFDHSIDTGSMDL 421
L+W I RS N+N ++ Q HS+DT S+D+
Sbjct: 272 LEWS-IQRSNDSNINCSTCLDVDCQHLHSLDTHSLDI 307
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -1
Query: 535 ETLRQKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDE 365
E+ R+K E+DKN ++ K + E+ G + D V R+YR G+ +D+
Sbjct: 1281 ESNRRKLESDKNVQSNKYVNPFASESEFCRCGASADPYTVLFWRLYRNKPSGIKLDK 1337
>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 237
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 621 RLRLYVTHPQWDTWLRRSIWKSIL 550
+L +Y + QW+ W R WKSI+
Sbjct: 8 KLHIYASPEQWEKWSPR--WKSIV 29
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 663 LLNMDGLPTWNVS*RLRLYVTHPQWDTWLRRSIWKSILIT 544
LLN D + W + Y PQW +R +++ ++L+T
Sbjct: 200 LLNKD-VREWLDTFAQHFYHAFPQWKDIIRETVYNALLVT 238
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -2
Query: 486 RILLSYCMKLPCCLLASRLMSPKSML---PVSIE*SNWVLVLMKMSRFRLKSL 337
+IL+ + PC +RL PK +L VS++ L ++SR L S+
Sbjct: 83 KILIKWIRTTPCFSYCARLKEPKDLLEIGSVSVDNKCSTCGLFRVSRIDLHSV 135
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 269 LINLLHARCIIGITLQWRHISRSRLFNLNRLIF 367
LI LH R ++G++L+ H+S F L IF
Sbjct: 632 LILQLHLRRVLGLSLKLYHLSILYFFELISSIF 664
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,643
Number of Sequences: 5004
Number of extensions: 53130
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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