Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12a04
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 186 1e-47
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 184 8e-47
09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821 180 9e-46
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 180 9e-46
04_01_0042 + 473912-474058,474208-474349,474442-476264 175 3e-44
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 115 4e-26
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 106 1e-23
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 104 7e-23
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 97 1e-20
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 44 8e-05
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 30 1.9
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 29 4.5
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 29 4.5
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 28 5.9
01_02_0084 + 10963076-10963570,10963888-10964845,10964846-109649... 28 7.8
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 186 bits (453), Expect = 1e-47
Identities = 88/135 (65%), Positives = 114/135 (84%)
Frame = -1
Query: 676 CCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKND 497
CC+VT +YGW+ANMERIMKAQALRD+S GYM++KK +EINP+++I+E LR++A+ADKND
Sbjct: 570 CCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMEELRKRADADKND 629
Query: 496 KAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVPP 317
K+VKDLV+LL+ETALL+SGF+LD+P SRI+RM+KLGL IDEDE + A D+PP
Sbjct: 630 KSVKDLVLLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEDETAE----ADTDMPP 685
Query: 316 LEGDADDASRMEEVD 272
LE DA + S+MEEVD
Sbjct: 686 LEDDAGE-SKMEEVD 699
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 184 bits (447), Expect = 8e-47
Identities = 86/135 (63%), Positives = 114/135 (84%)
Frame = -1
Query: 676 CCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKND 497
CC+VT +YGW+ANMERIMKAQALRD+S GYM++KK +EINP++SI++ LR++A+ADKND
Sbjct: 570 CCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKND 629
Query: 496 KAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVPP 317
K+VKDLV+LL+ETALL+SGF+L++P +RI+RM+KLGL IDEDE + A D+PP
Sbjct: 630 KSVKDLVMLLFETALLTSGFSLEDPNTFGTRIHRMLKLGLSIDEDESAE----ADADMPP 685
Query: 316 LEGDADDASRMEEVD 272
LE DA + S+MEEVD
Sbjct: 686 LEDDAGE-SKMEEVD 699
>09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821
Length = 576
Score = 180 bits (438), Expect = 9e-46
Identities = 84/134 (62%), Positives = 113/134 (84%)
Frame = -1
Query: 676 CCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKND 497
CC+VT +YGW+ANMERIMKAQALRD+S GYM++KK +EINP+++I++ LR++A+ADKND
Sbjct: 316 CCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMDELRKRADADKND 375
Query: 496 KAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVPP 317
K+VKDLV+LL+ETALL+SGF+L++P +RI+RM+KLGL IDEDE + A D+PP
Sbjct: 376 KSVKDLVMLLFETALLTSGFSLEDPNTFGTRIHRMLKLGLSIDEDESAE----ADADMPP 431
Query: 316 LEGDADDASRMEEV 275
LE DA + S+MEEV
Sbjct: 432 LEDDAGE-SKMEEV 444
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 180 bits (438), Expect = 9e-46
Identities = 84/134 (62%), Positives = 113/134 (84%)
Frame = -1
Query: 676 CCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKND 497
CC+VT +YGW+ANMERIMKAQALRD+S GYM++KK +EINP+++I++ LR++A+ADKND
Sbjct: 570 CCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMDELRKRADADKND 629
Query: 496 KAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVPP 317
K+VKDLV+LL+ETALL+SGF+L++P +RI+RM+KLGL IDEDE + A D+PP
Sbjct: 630 KSVKDLVMLLFETALLTSGFSLEDPNTFGTRIHRMLKLGLSIDEDESAE----ADADMPP 685
Query: 316 LEGDADDASRMEEV 275
LE DA + S+MEEV
Sbjct: 686 LEDDAGE-SKMEEV 698
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 175 bits (426), Expect = 3e-44
Identities = 80/135 (59%), Positives = 111/135 (82%)
Frame = -1
Query: 676 CCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKND 497
CC+VT +YGW+ANMERIMKAQALRD+S YM++KK +EINP++ I+E LR++A+AD ND
Sbjct: 571 CCLVTGEYGWTANMERIMKAQALRDSSMGAYMSSKKTMEINPENGIMEELRKRADADAND 630
Query: 496 KAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVPP 317
K+V+DLV+LL+ETALL+SGF+LD+P A+RI+RM+KLGL ID+D+ ++ A D+P
Sbjct: 631 KSVRDLVLLLFETALLTSGFSLDDPNTFAARIHRMLKLGLNIDDDDAAAADDDA--DMPA 688
Query: 316 LEGDADDASRMEEVD 272
L+ A + S+MEEVD
Sbjct: 689 LDDAAAEESKMEEVD 703
>06_03_1404 - 29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 115 bits (276), Expect = 4e-26
Identities = 55/133 (41%), Positives = 83/133 (62%)
Frame = -1
Query: 676 CCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKND 497
C +VT++YGWSANME+IM++Q L D S YM K+ LEINP H I++ LR K D
Sbjct: 698 CVVVTSKYGWSANMEKIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRDKVAQDSES 757
Query: 496 KAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVPP 317
+++K L+Y+TAL+ SGF L +P+ AS IYR ++ L + D ++ EE +V
Sbjct: 758 ESLKQTAKLVYQTALMESGFNLPDPKDFASSIYRSVQKSLDLSPDAAVEEEE----EVEE 813
Query: 316 LEGDADDASRMEE 278
E + ++S ++E
Sbjct: 814 AEVEEKESSNIKE 826
>09_04_0497 - 18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 106 bits (255), Expect = 1e-23
Identities = 57/137 (41%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Frame = -1
Query: 676 CCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKND 497
C +V+ ++GWSANMER+MKAQ L DTS++ +M ++ EINPDH IV+ L + +
Sbjct: 655 CVLVSGKFGWSANMERLMKAQTLGDTSSLEFMRGRRIFEINPDHPIVKDLSAACKNEPES 714
Query: 496 KAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASG---D 326
K V LLYETAL+SSG+T D P +IY M+ + LG P + E S +
Sbjct: 715 TEAKRAVELLYETALISSGYTPDSPAELGGKIYEMMTIALGGRWGRPEESEAATSESNVE 774
Query: 325 VPPLEGDADDASRMEEV 275
V EG A + EV
Sbjct: 775 VESSEGSATEVVEPSEV 791
>08_02_1073 - 24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 104 bits (249), Expect = 7e-23
Identities = 48/101 (47%), Positives = 66/101 (65%)
Frame = -1
Query: 676 CCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKND 497
C +V+ ++GWSANMER+MKAQ L DTS++ +M ++ EINPDH IV+ L + +
Sbjct: 904 CVLVSGKFGWSANMERLMKAQTLGDTSSLEFMRGRRIFEINPDHPIVKDLNAACKNEPES 963
Query: 496 KAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLG 374
K V LLYETAL+SSG+T D P +IY M+ + LG
Sbjct: 964 TEAKRAVELLYETALISSGYTPDSPAELGGKIYEMMTIALG 1004
>12_02_0522 - 19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 96.7 bits (230), Expect = 1e-20
Identities = 41/100 (41%), Positives = 67/100 (67%)
Frame = -1
Query: 676 CCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKND 497
C +V A++GWSANMER+M+AQ++ D S++ +M ++K EINP+H I++ L A+ +D
Sbjct: 915 CVLVAAKFGWSANMERLMRAQSMGDMSSLDFMRSRKVFEINPEHEIIKGLNAACRANPDD 974
Query: 496 KAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGL 377
V +L+ET+++SSGFT D P + +IY M+ +
Sbjct: 975 PEALKAVDILFETSMISSGFTPDNPAELSGKIYEMMSTAM 1014
>09_06_0076 +
20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -1
Query: 676 CCIVTAQYGWSANMERIMKAQALRD----TSTMGYMAAKKHLEINPDHSIVETLRQKAEA 509
CC VT +Y W ANMERIMK A+ D S + A K+ ++I P L+ E
Sbjct: 768 CCPVTGEYSWVANMERIMKENAIMDELPNKSQVNKCAPKQKVDILPVKENAIRLQSSEER 827
Query: 508 DKNDK 494
+ N K
Sbjct: 828 EVNTK 832
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 397 RMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDAS 290
R++ G+D DE + + EP D+P + G A S
Sbjct: 256 RIVLAATGVDHDELVSIAEPLLSDMPGVTGPAKPKS 291
>12_01_0179 -
1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = -1
Query: 499 DKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVP 320
D ++ D++ +L E L +D H S + R L D+DE EE AS D
Sbjct: 344 DASMTDIIPMLEELHPL-----IDLQTGHPSLVSRD-NLNTSSDDDEDDLEEEDASTDEN 397
Query: 319 PLEGDADDASRMEEV 275
LEG DD + ++V
Sbjct: 398 QLEGKIDDFANWKDV 412
>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = -1
Query: 499 DKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVP 320
D ++ D++ +L E L +D H S + R L D+DE EE AS D
Sbjct: 1391 DASMTDIIPMLEELHPL-----IDLQTGHPSLVSRD-NLNTSSDDDEDDLEEEDASTDEN 1444
Query: 319 PLEGDADDASRMEEV 275
LEG DD + ++V
Sbjct: 1445 QLEGKIDDFANWKDV 1459
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 356 RLIFINTKTQFDHSIDTGSMDLGLIKREARRQQGSFIQ*DNKILNSFVILV 508
+LIF K Q+ D +L +KREAR + G ++ + K+L FV+ +
Sbjct: 45 KLIFARAK-QYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLL--FVVRI 92
>01_02_0084 +
10963076-10963570,10963888-10964845,10964846-10964931,
10965187-10965211,10965544-10965644
Length = 554
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 658 QYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPD 548
+Y W A ++ A + + MG +AA+K EINPD
Sbjct: 438 EYVWGA----LLGASKMHNNVEMGRLAARKITEINPD 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,427,269
Number of Sequences: 37544
Number of extensions: 342435
Number of successful extensions: 866
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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