Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a04
         (676 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03810-2|CAA27435.1|  717|Drosophila melanogaster hsp 82 protein.     230   2e-60
AY122080-1|AAM52592.1|  717|Drosophila melanogaster AT20544p pro...   230   2e-60
AE014296-590|AAF47734.1|  717|Drosophila melanogaster CG1242-PA ...   230   2e-60
AY075384-1|AAL68222.1|  787|Drosophila melanogaster LD23641p pro...    91   1e-18
AE014297-4205|AAF56765.1|  787|Drosophila melanogaster CG5520-PA...    91   1e-18
BT001316-1|AAN71071.1|  690|Drosophila melanogaster AT15050p pro...    31   1.4  
AY118578-1|AAM49947.1|  349|Drosophila melanogaster LD43460p pro...    31   1.4  
AF115775-1|AAD29307.2|  686|Drosophila melanogaster Hsp90-relate...    31   1.4  
AE013599-183|AAF57362.1|  691|Drosophila melanogaster CG3152-PA ...    31   1.4  
AY089407-1|AAL90145.1|  440|Drosophila melanogaster AT23003p pro...    31   1.9  
AE014297-812|AAF54285.2|  440|Drosophila melanogaster CG8236-PA ...    31   1.9  
AY113621-1|AAM29626.1|  150|Drosophila melanogaster RH68082p pro...    30   2.5  
U05981-1|AAC46475.1|  150|Drosophila melanogaster PBPRP-2 protein.     29   5.8  
AY118484-1|AAM49853.1|  150|Drosophila melanogaster HL07789p pro...    29   5.8  
AE014298-3019|AAO41713.1|  150|Drosophila melanogaster CG1668-PB...    29   5.8  
AE014298-3018|AAF50907.1|  150|Drosophila melanogaster CG1668-PA...    29   5.8  

>X03810-2|CAA27435.1|  717|Drosophila melanogaster hsp 82 protein.
          Length = 717

 Score =  230 bits (562), Expect = 2e-60
 Identities = 110/136 (80%), Positives = 121/136 (88%), Gaps = 1/136 (0%)
 Frame = -1

Query: 676 CCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKND 497
           CCIVT+Q+GWSANMERIMKAQALRDT+TMGYMA KK LEINPDH IVETLRQKA+ADKND
Sbjct: 582 CCIVTSQFGWSANMERIMKAQALRDTATMGYMAGKKQLEINPDHPIVETLRQKADADKND 641

Query: 496 KAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPAS-GDVP 320
           KAVKDLVILL+ET+LLSSGF+LD PQVHASRIYRMIKLGLGIDEDEP+  ++  S GD P
Sbjct: 642 KAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGIDEDEPMTTDDAQSAGDAP 701

Query: 319 PLEGDADDASRMEEVD 272
            L  D +DAS MEEVD
Sbjct: 702 SLVEDTEDASHMEEVD 717


>AY122080-1|AAM52592.1|  717|Drosophila melanogaster AT20544p
           protein.
          Length = 717

 Score =  230 bits (562), Expect = 2e-60
 Identities = 110/136 (80%), Positives = 121/136 (88%), Gaps = 1/136 (0%)
 Frame = -1

Query: 676 CCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKND 497
           CCIVT+Q+GWSANMERIMKAQALRDT+TMGYMA KK LEINPDH IVETLRQKA+ADKND
Sbjct: 582 CCIVTSQFGWSANMERIMKAQALRDTATMGYMAGKKQLEINPDHPIVETLRQKADADKND 641

Query: 496 KAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPAS-GDVP 320
           KAVKDLVILL+ET+LLSSGF+LD PQVHASRIYRMIKLGLGIDEDEP+  ++  S GD P
Sbjct: 642 KAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGIDEDEPMTTDDAQSAGDAP 701

Query: 319 PLEGDADDASRMEEVD 272
            L  D +DAS MEEVD
Sbjct: 702 SLVEDTEDASHMEEVD 717


>AE014296-590|AAF47734.1|  717|Drosophila melanogaster CG1242-PA
           protein.
          Length = 717

 Score =  230 bits (562), Expect = 2e-60
 Identities = 110/136 (80%), Positives = 121/136 (88%), Gaps = 1/136 (0%)
 Frame = -1

Query: 676 CCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKND 497
           CCIVT+Q+GWSANMERIMKAQALRDT+TMGYMA KK LEINPDH IVETLRQKA+ADKND
Sbjct: 582 CCIVTSQFGWSANMERIMKAQALRDTATMGYMAGKKQLEINPDHPIVETLRQKADADKND 641

Query: 496 KAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPAS-GDVP 320
           KAVKDLVILL+ET+LLSSGF+LD PQVHASRIYRMIKLGLGIDEDEP+  ++  S GD P
Sbjct: 642 KAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGIDEDEPMTTDDAQSAGDAP 701

Query: 319 PLEGDADDASRMEEVD 272
            L  D +DAS MEEVD
Sbjct: 702 SLVEDTEDASHMEEVD 717


>AY075384-1|AAL68222.1|  787|Drosophila melanogaster LD23641p protein.
          Length = 787

 Score = 91.5 bits (217), Expect = 1e-18
 Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
 Frame = -1

Query: 676  CCIVTAQYGWSANMERIMKAQALR---DTSTMGYMAAKKHLEINPDHSIVETLRQKAEAD 506
            C +V   +GW+ NMER+  + A +   D     Y+  KK LEINP H ++  L ++ EAD
Sbjct: 642  CALVAGVFGWTGNMERLAMSNAHQKSDDPQRTYYLNQKKTLEINPRHPLMRELLRRVEAD 701

Query: 505  KNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGD 326
            + D   KD+ ++++ TA L SG+ L E    A  I +M++  LG+ +DE ++ +E    D
Sbjct: 702  EADDTAKDMAVMMFRTATLRSGYMLQETSQFADSIEQMMRQTLGVSQDEQVEFDEEEEDD 761

Query: 325  VPPL------EGDADDASRMEEVD 272
                       G+ADD    ++ D
Sbjct: 762  AEETATGSQESGNADDEEEEQQHD 785


>AE014297-4205|AAF56765.1|  787|Drosophila melanogaster CG5520-PA
            protein.
          Length = 787

 Score = 91.5 bits (217), Expect = 1e-18
 Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
 Frame = -1

Query: 676  CCIVTAQYGWSANMERIMKAQALR---DTSTMGYMAAKKHLEINPDHSIVETLRQKAEAD 506
            C +V   +GW+ NMER+  + A +   D     Y+  KK LEINP H ++  L ++ EAD
Sbjct: 642  CALVAGVFGWTGNMERLAMSNAHQKSDDPQRTYYLNQKKTLEINPRHPLMRELLRRVEAD 701

Query: 505  KNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGD 326
            + D   KD+ ++++ TA L SG+ L E    A  I +M++  LG+ +DE ++ +E    D
Sbjct: 702  EADDTAKDMAVMMFRTATLRSGYMLQETSQFADSIEQMMRQTLGVSQDEQVEFDEEEEDD 761

Query: 325  VPPL------EGDADDASRMEEVD 272
                       G+ADD    ++ D
Sbjct: 762  AEETATGSQESGNADDEEEEQQHD 785


>BT001316-1|AAN71071.1|  690|Drosophila melanogaster AT15050p
           protein.
          Length = 690

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/82 (23%), Positives = 39/82 (47%)
 Frame = -1

Query: 673 CIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKNDK 494
           C++T +    A     ++ Q+ +      +   +  LEINP H I++ L +  E+DK+  
Sbjct: 594 CVITVEE--MAAARHFIRTQSHQVPEQNRFALLQPELEINPKHPIIKKLNKLRESDKD-- 649

Query: 493 AVKDLVILLYETALLSSGFTLD 428
             + +   L+  A++ +G   D
Sbjct: 650 LAQLIAKQLFANAMVGAGLAED 671


>AY118578-1|AAM49947.1|  349|Drosophila melanogaster LD43460p
           protein.
          Length = 349

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/82 (23%), Positives = 39/82 (47%)
 Frame = -1

Query: 673 CIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKNDK 494
           C++T +    A     ++ Q+ +      +   +  LEINP H I++ L +  E+DK+  
Sbjct: 253 CVITVEE--MAAARHFIRTQSHQVPEQNRFALLQPELEINPKHPIIKKLNKLRESDKD-- 308

Query: 493 AVKDLVILLYETALLSSGFTLD 428
             + +   L+  A++ +G   D
Sbjct: 309 LAQLIAKQLFANAMVGAGLAED 330


>AF115775-1|AAD29307.2|  686|Drosophila melanogaster Hsp90-related
           protein TRAP1 protein.
          Length = 686

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/82 (23%), Positives = 39/82 (47%)
 Frame = -1

Query: 673 CIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKNDK 494
           C++T +    A     ++ Q+ +      +   +  LEINP H I++ L +  E+DK+  
Sbjct: 590 CVITVEE--MAAARHFIRTQSHQVPEQNRFALLQPELEINPKHPIIKKLNKLRESDKD-- 645

Query: 493 AVKDLVILLYETALLSSGFTLD 428
             + +   L+  A++ +G   D
Sbjct: 646 LAQLIAKQLFANAMVGAGLAED 667


>AE013599-183|AAF57362.1|  691|Drosophila melanogaster CG3152-PA
           protein.
          Length = 691

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/82 (23%), Positives = 39/82 (47%)
 Frame = -1

Query: 673 CIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKNDK 494
           C++T +    A     ++ Q+ +      +   +  LEINP H I++ L +  E+DK+  
Sbjct: 595 CVITVEE--MAAARHFIRTQSHQVPEQNRFALLQPELEINPKHPIIKKLNKLRESDKD-- 650

Query: 493 AVKDLVILLYETALLSSGFTLD 428
             + +   L+  A++ +G   D
Sbjct: 651 LAQLIAKQLFANAMVGAGLAED 672


>AY089407-1|AAL90145.1|  440|Drosophila melanogaster AT23003p
           protein.
          Length = 440

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -1

Query: 655 YGWSANMERIMKAQALRDTSTMGYMAAK--KHLEINPDHSIVETLRQKAEADKNDKAVKD 482
           Y +S + E I     +++     YM+A+  +  E   DH ++E  R+K E   N+    D
Sbjct: 129 YDYSKSDEDIYIRDEMQEVRPEDYMSAESSEKSEEEEDHVLLEIGRKKVEEYFNESDHSD 188

Query: 481 LVILLYETALLSSGFTLDEPQVHASR 404
           +V + +E         LDEP  H  R
Sbjct: 189 IVRMEHEFEKFD--LKLDEPVGHTHR 212


>AE014297-812|AAF54285.2|  440|Drosophila melanogaster CG8236-PA
           protein.
          Length = 440

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -1

Query: 655 YGWSANMERIMKAQALRDTSTMGYMAAK--KHLEINPDHSIVETLRQKAEADKNDKAVKD 482
           Y +S + E I     +++     YM+A+  +  E   DH ++E  R+K E   N+    D
Sbjct: 129 YDYSKSDEDIYIRDEMQEVRPEDYMSAESSEKSEEEEDHVLLEIGRKKVEEYFNESDHSD 188

Query: 481 LVILLYETALLSSGFTLDEPQVHASR 404
           +V + +E         LDEP  H  R
Sbjct: 189 IVRMEHEFEKFD--LKLDEPVGHTHR 212


>AY113621-1|AAM29626.1|  150|Drosophila melanogaster RH68082p
           protein.
          Length = 150

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 592 MGYMAAKKHLEINPDHSIVETLRQKAEADKNDKAVKDLV 476
           +G  +AK H EIN DH+       KAE    D+ V+ L+
Sbjct: 18  LGATSAKPHEEINRDHAAELANESKAETGATDEDVEQLM 56


>U05981-1|AAC46475.1|  150|Drosophila melanogaster PBPRP-2 protein.
          Length = 150

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 592 MGYMAAKKHLEINPDHSIVETLRQKAEADKNDKAVKDLV 476
           +G  +AK H EIN DH +      KAE    D+ V+ L+
Sbjct: 18  LGATSAKPHEEINRDHLLELANECKAETGATDEDVEQLM 56


>AY118484-1|AAM49853.1|  150|Drosophila melanogaster HL07789p
           protein.
          Length = 150

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 592 MGYMAAKKHLEINPDHSIVETLRQKAEADKNDKAVKDLV 476
           +G  +AK H EIN DH+       KAE    D+ V+ L+
Sbjct: 18  LGATSAKPHEEINRDHAAELANECKAETGATDEDVEQLM 56


>AE014298-3019|AAO41713.1|  150|Drosophila melanogaster CG1668-PB,
           isoform B protein.
          Length = 150

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 592 MGYMAAKKHLEINPDHSIVETLRQKAEADKNDKAVKDLV 476
           +G  +AK H EIN DH+       KAE    D+ V+ L+
Sbjct: 18  LGATSAKPHEEINRDHAAELANECKAETGATDEDVEQLM 56


>AE014298-3018|AAF50907.1|  150|Drosophila melanogaster CG1668-PA,
           isoform A protein.
          Length = 150

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 592 MGYMAAKKHLEINPDHSIVETLRQKAEADKNDKAVKDLV 476
           +G  +AK H EIN DH+       KAE    D+ V+ L+
Sbjct: 18  LGATSAKPHEEINRDHAAELANECKAETGATDEDVEQLM 56


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,298,179
Number of Sequences: 53049
Number of extensions: 590814
Number of successful extensions: 1396
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)