Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a04
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical pr...   206   1e-53
Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...    86   2e-17
Z68108-2|CAA92135.1|  406|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC024775-2|AAK68456.1|  452|Caenorhabditis elegans Hypothetical ...    29   2.3  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z47356-5|CAA87418.1|  173|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U13644-1|AAB52683.1|  437|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF040642-9|AAB94950.1|  589|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical
           protein C47E8.5 protein.
          Length = 702

 Score =  206 bits (502), Expect = 1e-53
 Identities = 99/136 (72%), Positives = 115/136 (84%), Gaps = 1/136 (0%)
 Frame = -1

Query: 676 CCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKND 497
           CCIVT++YGWSANMERIMKAQALRD+STMGYMAAKKHLEINPDH+I++TLR + E DKND
Sbjct: 567 CCIVTSEYGWSANMERIMKAQALRDSSTMGYMAAKKHLEINPDHAIMKTLRDRVEVDKND 626

Query: 496 KAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDV-P 320
           K VKDLV+LL+ETALL+SGF+L+EPQ HASRIYRMIKLGL I +DE      P+S     
Sbjct: 627 KTVKDLVVLLFETALLASGFSLEEPQSHASRIYRMIKLGLDIGDDEIEDSAVPSSCTAEA 686

Query: 319 PLEGDADDASRMEEVD 272
            +EG  +DASRMEEVD
Sbjct: 687 KIEGAEEDASRMEEVD 702


>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical protein
            T05E11.3 protein.
          Length = 760

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
 Frame = -1

Query: 670  IVTAQYGWSANMERIMKAQAL---RDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKN 500
            +V + YGWS NMERIMK+QA    +D +   Y   KK  EINP H +++ L ++  A + 
Sbjct: 624  LVASSYGWSGNMERIMKSQAYAKAKDPTQDFYATQKKTFEINPRHPVIKELLKRVTASEE 683

Query: 499  DKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVP 320
            D        LL+ETA L SGF+L +    A RI  +++  L + +D  ++ E+      P
Sbjct: 684  DTTAASTAKLLFETATLRSGFSLQDQVGFADRIEAVLRQSLDVSQDAQVETEQHIEEAEP 743

Query: 319  PLEGDADDASRMEE 278
              E +A + + +EE
Sbjct: 744  --EPEAAEETTIEE 755


>Z68108-2|CAA92135.1|  406|Caenorhabditis elegans Hypothetical
           protein T05A10.3 protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 367 EDEPIQVEEPASGDVPPLEGDADDASRMEEVD*D 266
           ++EP++VEEP    V P EGD   AS  E +  D
Sbjct: 182 DEEPVEVEEPV---VEPTEGDEQMASSSEHITKD 212


>AC024775-2|AAK68456.1|  452|Caenorhabditis elegans Hypothetical
           protein Y41D4A.6 protein.
          Length = 452

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -1

Query: 436 TLDEPQVHAS---RIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEG 308
           +LD P + A    + + +++L  GID+++   VE P    +  LEG
Sbjct: 184 SLDAPSIFAKTAQKCWELLELSKGIDKNDSTSVELPEKAGISSLEG 229


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 567 IWKSILITRLWKH*GRKRKPTRMTKLLRILLSYCMKLP 454
           +WK+ LI+R+ +H  R  +P     +   LL   +KLP
Sbjct: 232 LWKNYLISRIREHNTRDAEPNEWIVMAARLLKAAVKLP 269


>Z47356-5|CAA87418.1|  173|Caenorhabditis elegans Hypothetical
           protein T15H9.5 protein.
          Length = 173

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -1

Query: 622 KAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKNDKAVKDLVI 473
           K   ++  S     + KK  +  PD  + + ++++ +AD N+  VK+L I
Sbjct: 70  KKSPIKVLSEKKLKSKKKEEDKEPDEKVEKDVKKEVKADNNEPLVKNLKI 119


>U13644-1|AAB52683.1|  437|Caenorhabditis elegans Hypothetical
           protein F56D2.5 protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 51  VAYITNSNKTFIKIQYCKYS 110
           VAY+T+S +  ++  YC YS
Sbjct: 281 VAYLTDSQRNLVECSYCNYS 300


>AF040642-9|AAB94950.1|  589|Caenorhabditis elegans Hypothetical
           protein C50D2.2 protein.
          Length = 589

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 612 LYVTHPQWDTWLRRSIWKSI 553
           L + H  W TWLR  +W SI
Sbjct: 525 LMMVHLAWITWLRLVVWMSI 544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,184,827
Number of Sequences: 27780
Number of extensions: 305447
Number of successful extensions: 737
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)