Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a03
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    27   1.8  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   4.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.4  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   7.1  

>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 483 DDIKDRLKHRMSIAYLESI*IKKNQLNPPIAIKR 382
           DD+K  LK R S+AY + I  KK +    I I +
Sbjct: 89  DDVKQCLKKRQSLAYDQMIAAKKKENEKKIEIMK 122


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = -1

Query: 379 SLSMNSQFSVRRHFYVNVIKTGLGLN*RPRRHNNTQELSKIVSFLDELHLARNSTRDVPL 200
           SL       + +HF +++ +T +G+N    +  + +E   + SFL ++ L  N+   V  
Sbjct: 59  SLGCKLDIHIVQHFSLSLFETSVGMN---WKSFSNKEKESVTSFLCKISLEDNNLLSVHF 115

Query: 199 VDNTL 185
           V + L
Sbjct: 116 VRSKL 120


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +1

Query: 145  NQDVNQRRASISCTEYYRQEAHP*LSFVLDVTRLRMIQFSIILVC 279
            +++ N R  ++SC ++Y       L+  LD+++L   Q  + + C
Sbjct: 1114 SENENTRSNALSCIDHYLNAHKMLLNTTLDISKLPSFQNLVTVFC 1158


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 528 YFCFINFVYSHKSNIK 575
           YF FIN +++H  N+K
Sbjct: 7   YFFFINLIFAHDLNVK 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,640
Number of Sequences: 5004
Number of extensions: 50306
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)