Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a03
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0293 - 8639826-8639852,8640161-8640361,8641165-8641611,864...    28   7.4  

>02_02_0293 -
           8639826-8639852,8640161-8640361,8641165-8641611,
           8641726-8641816,8642949-8643949
          Length = 588

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = +3

Query: 201 RGTSLVEFRARCNSSKNDTIFDNSCVL----LWRRGRQLRPKPVFITFT*KCLLTLN*LF 368
           R    VE RARC  S+  ++FD   +L     W RG    P P+        LL  + L 
Sbjct: 93  RAVRAVERRARCCYSERTSVFDGYFILEFFFKWNRG---EPDPLCDVGWGLTLLHSDLLL 149

Query: 369 IDNENVLLRWEDLIDFF 419
           ++N+      E L D F
Sbjct: 150 LENQIPFFVLERLFDTF 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,289,890
Number of Sequences: 37544
Number of extensions: 273718
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)