Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a03
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 247 LDELHLARNSTRDVP 203
           L E+HLA N  RD+P
Sbjct: 287 LREIHLAYNGLRDLP 301


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 328 VIKTGLGLN*RPRRHNNTQELSKIVSFLDELHL 230
           +++T +G++   R HN  +    ++   D LHL
Sbjct: 190 LLETAMGVSKPTRDHNAFEYAMAVMKMCDILHL 222


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 613 WVKVVFKXWI 584
           WVKVVF  W+
Sbjct: 331 WVKVVFLYWL 340


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 502 IRYHLLGEFIFVS*ILFTP 558
           + Y LL  F+F +  LFTP
Sbjct: 48  LEYFLLSAFLFGANALFTP 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,954
Number of Sequences: 438
Number of extensions: 3182
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)