Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a01
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    29   1.9  

>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
           protein F36H1.2c protein.
          Length = 1427

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +2

Query: 200 AAVRFQSHRQQSLPTKDKDTFTPIFRNIDGRFKIILLYVEQKKRSTVAKPNRGRALIYER 379
           A VR    +   +  +D +  TP+   ID  F  I   + +KK +   K   G   +   
Sbjct: 273 AIVRMILDKFADINCQDSEKRTPLHLAIDKSFNDIAYILLEKKPNLELKNKDGETPLLRA 332

Query: 380 RRCQYVNYC 406
            +C++V+ C
Sbjct: 333 AKCRHVHLC 341


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical
           protein F36H1.2b protein.
          Length = 1379

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +2

Query: 200 AAVRFQSHRQQSLPTKDKDTFTPIFRNIDGRFKIILLYVEQKKRSTVAKPNRGRALIYER 379
           A VR    +   +  +D +  TP+   ID  F  I   + +KK +   K   G   +   
Sbjct: 273 AIVRMILDKFADINCQDSEKRTPLHLAIDKSFNDIAYILLEKKPNLELKNKDGETPLLRA 332

Query: 380 RRCQYVNYC 406
            +C++V+ C
Sbjct: 333 AKCRHVHLC 341


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical
           protein F36H1.2a protein.
          Length = 1398

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +2

Query: 200 AAVRFQSHRQQSLPTKDKDTFTPIFRNIDGRFKIILLYVEQKKRSTVAKPNRGRALIYER 379
           A VR    +   +  +D +  TP+   ID  F  I   + +KK +   K   G   +   
Sbjct: 273 AIVRMILDKFADINCQDSEKRTPLHLAIDKSFNDIAYILLEKKPNLELKNKDGETPLLRA 332

Query: 380 RRCQYVNYC 406
            +C++V+ C
Sbjct: 333 AKCRHVHLC 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,484,659
Number of Sequences: 27780
Number of extensions: 241025
Number of successful extensions: 507
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)