Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12a01
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.32 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.3  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   7.0  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   7.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 393  YWHLRRSYIKARPRFGLATVDLFFCSTYNNMIL 295
            +WH R + IK RP      V LFF     N+ L
Sbjct: 983  FWHHRLAEIKRRPDLEYGKVWLFFGCRQRNLDL 1015


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 169 KDLAGRNVESCFSLTVKQSK-PAVLNVLGSVT 77
           + L  +N E CFSL  K  K P  L  +  VT
Sbjct: 535 RTLGNQNSEMCFSLKFKNKKLPVFLAEIWDVT 566


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 120 NNPSLLCLMFLAV*RFDLLLAEIN 49
           N PS+ C M+  +  F L+  E N
Sbjct: 66  NEPSITCYMYCLLEAFSLVDDEAN 89


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 120 NNPSLLCLMFLAV*RFDLLLAEIN 49
           N PS+ C M+  +  F L+  E N
Sbjct: 66  NEPSITCYMYCLLEAFSLVDDEAN 89


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +2

Query: 128 ETETRLHITPSQIFASI*VNITWDAAVRFQSHRQQSLPTKDKDTFTPIFRNI 283
           +T +++ +T   +   +  NIT        ++    LPT  K T T +  NI
Sbjct: 17  KTSSKVMLTRGTVNDIVSRNITMVLENLLMNYENNQLPTHGKGTPTVVKTNI 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,546
Number of Sequences: 438
Number of extensions: 2997
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)