Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11p14
         (739 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E8030C Cluster: PREDICTED: similar to synaptotag...    36   1.4  
UniRef50_Q54BH5 Cluster: Putative uncharacterized protein; n=1; ...    35   1.8  
UniRef50_Q8IJE4 Cluster: Putative uncharacterized protein; n=1; ...    33   7.3  
UniRef50_P32568 Cluster: Protein SNQ2; n=9; Saccharomycetales|Re...    33   7.3  
UniRef50_A0BCE4 Cluster: Chromosome undetermined scaffold_10, wh...    33   9.7  

>UniRef50_UPI0000E8030C Cluster: PREDICTED: similar to
           synaptotagmin-like protein 2-a delta 2S-II; n=3;
           Tetrapoda|Rep: PREDICTED: similar to synaptotagmin-like
           protein 2-a delta 2S-II - Gallus gallus
          Length = 931

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 550 RKANWFPYKPRNSKDNLK*NYKVVLNLSSK-SGPGSV 657
           RK NW+P KPR S   L+  ++ V+NLS K   PGS+
Sbjct: 745 RKLNWYPLKPRVSASQLQFYHRGVMNLSIKYVPPGSL 781


>UniRef50_Q54BH5 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 748

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 573 IWKPVCFSIPYETSRKLVYRLIVSHYCDRINTFVTKYCMICR 448
           +W P C S PYETSR   +  I+     RIN    K   +C+
Sbjct: 637 LWDPSCISSPYETSRYHSFESILKFLKSRINVPKRKVLHVCQ 678


>UniRef50_Q8IJE4 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 303

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +2

Query: 308 LQMYINLYIYMFLLI*IEFHEQCKHSTTIVCNNIKNTKQV 427
           + ++ N+YIY+++ I + F   CK S  I+ N+IK  ++V
Sbjct: 32  ISVHQNIYIYIYIYIYLLFFSFCKPSRAILENDIKQLEEV 71


>UniRef50_P32568 Cluster: Protein SNQ2; n=9; Saccharomycetales|Rep:
           Protein SNQ2 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 1501

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 573 IWKPVCFSIPYETSRKLVYRLIVSHYC 493
           IWK VCF+IPYE  ++++    VS YC
Sbjct: 854 IWKDVCFTIPYEGGKRMLLD-NVSGYC 879


>UniRef50_A0BCE4 Cluster: Chromosome undetermined scaffold_10, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_10,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1004

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 22/55 (40%), Positives = 28/55 (50%)
 Frame = -1

Query: 616 LCNFILNYLSSYVAYMETSLLFDTI*DFTKIGI*IDSESLLRSHQYFCN*ILYDL 452
           + NFILNYL  YV  ME  L F T   + + G+ I  +  +  H YF     YDL
Sbjct: 256 ILNFILNYLPVYVYLMEIVLTFLT--GYYEHGVLIMDQKQVAKH-YFKKSFFYDL 307


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,134,556
Number of Sequences: 1657284
Number of extensions: 10561416
Number of successful extensions: 21063
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21004
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)