Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11p14
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068711-2|AAC17776.1|  414|Caenorhabditis elegans Hypothetical ...    32   0.37 
Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL021487-13|CAA16356.3|  326|Caenorhabditis elegans Hypothetical...    29   2.6  
Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane...    28   7.9  

>AF068711-2|AAC17776.1|  414|Caenorhabditis elegans Hypothetical
           protein R09A1.2 protein.
          Length = 414

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 448 TTNHTIFSYKSIDAIAVVTHYQSIYQF 528
           TTNH I   KS+D  A + H++S+ QF
Sbjct: 44  TTNHRIDMNKSLDITAAIHHFESVSQF 70


>Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical
           protein ZK822.5a protein.
          Length = 577

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 438 SAVCTCFVFLMLLHTIVVECLH 373
           S++ TCFVFL + H +   CLH
Sbjct: 98  SSIVTCFVFLPVFHKMKSTCLH 119


>AL021487-13|CAA16356.3|  326|Caenorhabditis elegans Hypothetical
           protein Y45F10B.5 protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +1

Query: 463 IFSYKSIDAIAVVTHYQSIYQFS*SLIWYRKANWFPYKPRN 585
           IF +  I A+         YQF    IWY   NWF  K  N
Sbjct: 166 IFGFSLIPAVGTCRQLLGPYQFGAIFIWY-TGNWFDIKLMN 205


>Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical
           protein K06B4.1 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = -2

Query: 474 VTKYCMICRF*----HSAVCTCFVFLMLLHTIVVECLH 373
           + K C+IC       H  V +CF   M  H +VVE LH
Sbjct: 1   MNKNCLICHRKAAGQHYGVLSCFACKMFFHRMVVENLH 38


>Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical
           protein F56F3.2b protein.
          Length = 685

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 383 NVYIVRGTQFILIKTYIYINLYTFVINVVEMYLFA 279
           N+++V G +F+L  T +   +Y F++  +E   FA
Sbjct: 268 NLHVVHGLEFLLFFTIVSGMVYNFMLPYIENVAFA 302


>Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical
           protein F56F3.2a protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 383 NVYIVRGTQFILIKTYIYINLYTFVINVVEMYLFA 279
           N+++V G +F+L  T +   +Y F++  +E   FA
Sbjct: 268 NLHVVHGLEFLLFFTIVSGMVYNFMLPYIENVAFA 302


>AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane
           protein NDG-4 protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 383 NVYIVRGTQFILIKTYIYINLYTFVINVVEMYLFA 279
           N+++V G +F+L  T +   +Y F++  +E   FA
Sbjct: 268 NLHVVHGLEFLLFFTIVSGMVYNFMLPYIENVAFA 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,630,024
Number of Sequences: 27780
Number of extensions: 277738
Number of successful extensions: 519
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)