Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11p10
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.2  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 633 WRIPYICKPSQNSAF 677
           WR PY+C  +   AF
Sbjct: 5   WRFPYLCYKNGGGAF 19


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 633 WRIPYICKPSQNSAF 677
           WR PY+C  +   AF
Sbjct: 43  WRFPYLCYKNGGGAF 57



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 631 SIWGLLF*ELSVVITMKQMFCSLGIKLFGMSSEELNLVRK 512
           SIW  LF  + ++I +   FC++   +     E   L+RK
Sbjct: 374 SIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEWPRLLRK 413


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 633 WRIPYICKPSQNSAF 677
           WR PY+C  +   AF
Sbjct: 96  WRFPYLCYKNGGGAF 110



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 631 SIWGLLF*ELSVVITMKQMFCSLGIKLFGMSSEELNLVRK 512
           SIW  LF  + ++I +   FC++   +     E   L+RK
Sbjct: 427 SIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEWPRLLRK 466


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 549 KSLIPREQNIC-FIVMTTESSQNNN 620
           K  + RE N   FI+MTT +  NNN
Sbjct: 454 KRSVSRESNSNQFILMTTVNEGNNN 478


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 457 YVPFFFQIKIYPNFSCDTIF*PNLTLHLTSRK 552
           Y+ F +     P+F C+      LTLH  S++
Sbjct: 106 YLKFSYPRMRAPSFICENETRQGLTLHYRSKR 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,992
Number of Sequences: 438
Number of extensions: 3739
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)