Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11p08
(294 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 50 9e-08
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 48 3e-07
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 43 8e-06
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 42 2e-05
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 38 4e-04
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 0.33
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 27 0.43
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 1.8
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 3.1
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 25 3.1
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 24 5.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 23 7.1
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 23 7.1
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 7.1
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 23 9.3
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 23 9.3
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 23 9.3
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 23 9.3
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 49.6 bits (113), Expect = 9e-08
Identities = 29/67 (43%), Positives = 36/67 (53%)
Frame = -1
Query: 294 VNCVAPGIVVTKFASAITNSEAGAEKSLSNVPLKRFGRPEEIAGAVAFLASDDASYITGE 115
VN VAPG + T S+ E E S VPL R G+P E+A FLA D Y+TG+
Sbjct: 217 VNAVAPGPIYTPLVSSTFPKEK-IELS-DQVPLGRMGQPVEVASCYLFLACSDGGYMTGQ 274
Query: 114 TVVVAGG 94
T+ GG
Sbjct: 275 TLHPNGG 281
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 48.0 bits (109), Expect = 3e-07
Identities = 27/71 (38%), Positives = 38/71 (53%)
Frame = -1
Query: 294 VNCVAPGIVVTKFASAITNSEAGAEKSLSNVPLKRFGRPEEIAGAVAFLASDDASYITGE 115
VN V+PG + T + E +K P R G P+E+ GA +LASD +SY TG
Sbjct: 187 VNSVSPGYIDTDLT--LYADENLRKKWKEYTPQARIGLPDELPGAYLYLASDASSYCTGS 244
Query: 114 TVVVAGGAPAR 82
++V GG +R
Sbjct: 245 DIIVDGGYCSR 255
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 43.2 bits (97), Expect = 8e-06
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = -1
Query: 294 VNCVAPGIVVTKFASAITNSEAGAEKSLSNVPLKRFGRPEEIAGAVAFLASDDASYITGE 115
VNCV+PG S +T + E P +R G +EIA A +LASD ASY +G
Sbjct: 196 VNCVSPGYTT----SDMTGGKFHKEWE-PYTPFERNGLAKEIASAYLYLASDAASYASGT 250
Query: 114 TVVVAGG 94
++V GG
Sbjct: 251 NLIVDGG 257
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 41.5 bits (93), Expect = 2e-05
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = -1
Query: 201 PLKRFGRPEEIAGAVAFLASDDASYITGETVVVAGG 94
P+ R G PE++A AV FLA S+ITG T+ V GG
Sbjct: 202 PVGRLGTPEDVARAVIFLADSKNSFITGTTLYVDGG 237
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 37.5 bits (83), Expect = 4e-04
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = -1
Query: 204 VPLKRFGRPEEIAGAVAFLASDDASYITGETVVVAGG 94
VP KR G E+ G +LAS+ +S++TG ++V GG
Sbjct: 221 VPFKRLGLTPELRGTYLYLASNASSFVTGLDLIVDGG 257
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 27.9 bits (59), Expect = 0.33
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 55 QVDSSDDSKSCGRPSSNHNSLSGDVAGVIRSQKRYGTSNFFWSP 186
Q D SDDS+ + N+ + G V V++ R+G WSP
Sbjct: 819 QFDISDDSEDSKLLTINNPQIPGQVISVVKESIRHGFLG--WSP 860
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 27.5 bits (58), Expect = 0.43
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Frame = -1
Query: 285 VAPGIVVTKFASAI---TNSEA-GAEKSLSNVPLKRFGR---PEEIAGAVAFLASDDASY 127
V PG+V T +I +N EA G + LK G+ P++IA A++FLA ++
Sbjct: 176 VRPGVVDTPMQVSIRNDSNKEAMGGDTHNFFKELKTSGQLVAPQDIAKALSFLALNNNPK 235
Query: 126 ITGETV 109
+TG+ V
Sbjct: 236 LTGQFV 241
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 1.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 79 KSCGRPSSNHNSLSGDVAGVIRSQKRYGTSNFFWSPESFQWDIR 210
K G P S LSG V R+Q + FF +P++ DI+
Sbjct: 138 KITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIK 181
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 24.6 bits (51), Expect = 3.1
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +2
Query: 89 GAPPATTTVSPVM*LASSEAKN--ATAPAISSGLPNLFNGTFDRLFSAPASEFVIADANF 262
G P TTT+ P +AS+ ++N T S L N T S P + V ++
Sbjct: 50 GPVPGTTTIYPTSNVASNTSENYPYTGSKSLSSSSILSNSTISTSSSTPITASVPTSSSI 109
Query: 263 V--TTIP 277
+ +TIP
Sbjct: 110 LSNSTIP 116
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 24.6 bits (51), Expect = 3.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 161 APAISSGLPNLFNGTFD 211
AP+ SS P++FNG D
Sbjct: 212 APSFSSSFPHIFNGAKD 228
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 23.8 bits (49), Expect = 5.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 253 CKLCDDDPGSDAVH 294
CKL DDDP + H
Sbjct: 212 CKLWDDDPNKSSYH 225
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 23.4 bits (48), Expect = 7.1
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 68 ATTQSRAGAPPATTTVSPVM*LASSEAKNATAPAISSGLPNLFNGTFDRLFSAPASEFVI 247
+TT + A + ++TVS L SS + A A ++ +N T L S+ S +
Sbjct: 234 STTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYN-TSSLLPSSTPSSTPL 292
Query: 248 ADANFVT 268
+ AN T
Sbjct: 293 SSANSTT 299
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 23.4 bits (48), Expect = 7.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 46 NLFQVDSSDDSKSCGRPSSNHNSL 117
NL+Q+ SDD KS G P + +SL
Sbjct: 552 NLYQISRSDDIKS-GAPVLDTSSL 574
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 23.4 bits (48), Expect = 7.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 185 PNLFNGTFDRLFSAP 229
P ++NG+F RLF P
Sbjct: 169 PTVYNGSFKRLFYLP 183
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 23.0 bits (47), Expect = 9.3
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 139 IRSQKRYGTSNFFWSPESFQWDIR*ALLRPSLGVCYR 249
+ S KRY +NF+ +D+ RP + YR
Sbjct: 465 VNSAKRYILNNFYDGARQDAYDLVLGQFRPDVNFRYR 501
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 23.0 bits (47), Expect = 9.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 146 LRMTPATSPERLLWLLEGRP 87
++M P S RLL L GRP
Sbjct: 460 VKMIPPNSRARLLGFLNGRP 479
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 23.0 bits (47), Expect = 9.3
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 287 ASLPGSSSQSLHPR*QTPRLGRRRAYRMSH*KDSGDQKKLLVP*RFWLRMTPATSP 120
AS+ + S HP +L + Y+MSH + D+ + L W ++ A P
Sbjct: 54 ASIVSNGSLVSHPSIDKGKLSILKRYKMSHRLTAIDKLRPLTVLVAWKQLNIAMRP 109
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 23.0 bits (47), Expect = 9.3
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Frame = -2
Query: 230 LGRRRAYRMSH*KDSG-------DQKKLLVP*RFW---LRMTP---ATSPERLLWLLEGR 90
L RRR YR +H +D+ Q KLL P +W L + P T + L +
Sbjct: 785 LTRRRLYRFNHRQDAAILLQHNLRQLKLLKPHPWWNLFLHLKPLLGTTQTDEYLRRKDAL 844
Query: 89 PHDFESSLEST 57
++ ++ LEST
Sbjct: 845 INNLQNQLEST 855
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,253,889
Number of Sequences: 5004
Number of extensions: 23200
Number of successful extensions: 77
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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