Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11p07
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   1.8  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    26   3.2  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    26   4.2  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    26   4.2  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   5.6  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   5.6  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   7.4  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   9.8  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   9.8  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   9.8  
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    25   9.8  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   9.8  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    25   9.8  

>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 313 FRPYPSLLHISNHRLVTTVMRF 378
           FRPY  LL   N R+VT  +RF
Sbjct: 482 FRPYVELLPYKNSRMVTHSIRF 503


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 163 IGTKPHSSIIPCLGQTSDI 219
           +GTK +  +IP  G+TSDI
Sbjct: 445 VGTKENPMVIPLCGKTSDI 463


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
 Frame = +2

Query: 371 CVFTNKSSWNECAYCWG-PLTFCHTSSPFFKSCA--PPSPITH 490
           CVFT   +W    Y W  P    H    F       PP P TH
Sbjct: 286 CVFTTGQAWQFRDYKWSEPHQLFHHVKGFLVQYVGDPPHPATH 328


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 34  QVTKKNISKIY*EMKLDNGDGGVASTISHIYEKL 135
           Q TK+ I K+    K+D     + STI  IY  L
Sbjct: 140 QATKRGIPKVIFVNKMDRVGSSLGSTIRSIYTNL 173


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 337  HISNHRLVTTVMRFH*QE*LE*MCLLLGPADFLPHLIPFLQILCTTISDYTFSGPF 504
            H+S  RL   V   + QE L  +  ++G ADFL + +     + +  +D  F  PF
Sbjct: 2729 HVSLRRLFELVKNHYSQELLSQVHKIVGSADFLGNPVGLFTTITSGFAD-IFYEPF 2783


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 277 ISVN*TTRIFHIFRPYPSLLHISNH 351
           I  N  T+ FH+ RP   +L IS H
Sbjct: 598 IKTNYPTQEFHLLRPTIKILQISKH 622


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 394 LE*MCLLLGPADFLPH 441
           L+ MCL LGPA F+ H
Sbjct: 172 LDSMCLFLGPARFVNH 187


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 443 SSPFFKSCAPPSPITHLAAHLSFVRYFKHTSTKSS 547
           S+P F S  PP  +  L  H+S V+   H     S
Sbjct: 365 STPGFSSNKPPLTMLQLDIHISSVQILTHCKLPES 399


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 443 SSPFFKSCAPPSPITHLAAHLS 508
           S+P FKS AP SP + ++ H S
Sbjct: 359 SNPLFKSPAPYSPTSVISNHSS 380


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 449 PFFKSCAPPSPITHLAAHLS 508
           PF K+C+  SP + LAA +S
Sbjct: 57  PFGKTCSTASPASSLAADMS 76


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 525 LKYLTNDKWAAKCVIGD 475
           L+Y+  D+W  KC + D
Sbjct: 198 LRYIFGDRWGLKCSLAD 214


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 466 CTTISDYTFSGPFIVRQ 516
           C  I +Y FS P+I RQ
Sbjct: 521 CLKIGNYAFSSPYIERQ 537


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 433 LPHLIPFLQILCTTISDYTFSGPF 504
           +P L P    +C  I+ Y F  PF
Sbjct: 144 IPELGPISMAICMDINPYDFKAPF 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,502
Number of Sequences: 5004
Number of extensions: 46260
Number of successful extensions: 108
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)