Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11p07
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    25   0.51 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    25   0.51 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   0.51 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   3.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   6.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.3  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 9/34 (26%), Positives = 13/34 (38%)
 Frame = +2

Query: 413 CWGPLTFCHTSSPFFKSCAPPSPITHLAAHLSFV 514
           CW P    +   PF   C P   + +    L +V
Sbjct: 339 CWLPFFLMYVIVPFCPDCCPSDRMVYFITWLGYV 372


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 9/34 (26%), Positives = 13/34 (38%)
 Frame = +2

Query: 413 CWGPLTFCHTSSPFFKSCAPPSPITHLAAHLSFV 514
           CW P    +   PF   C P   + +    L +V
Sbjct: 339 CWLPFFLMYVIVPFCPDCCPSDRMVYFITWLGYV 372


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 9/34 (26%), Positives = 13/34 (38%)
 Frame = +2

Query: 413 CWGPLTFCHTSSPFFKSCAPPSPITHLAAHLSFV 514
           CW P    +   PF   C P   + +    L +V
Sbjct: 339 CWLPFFLMYVIVPFCPDCCPSDRMVYFITWLGYV 372


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = +1

Query: 34  QVTKKNISKIY*EMKLDNGDGGVASTISHIYEKLYRISGYVG-NIGTKPHSSIIPCLGQT 210
           Q  +  +++I  + +   G     S   +   K   +SG  G NI     S +I C+GQ 
Sbjct: 196 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI---SQVIACVGQQ 252

Query: 211 SDIGTRFQIRMKTNYLP 261
           +  G R     +   LP
Sbjct: 253 NVEGKRIPFGFRKRTLP 269


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 15  DVMHDHSSDQKKYF 56
           D++ +H+SDQ K+F
Sbjct: 117 DLVPNHTSDQHKWF 130


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 169 CRYCLHNPKFGIVF 128
           CR C+H   F ++F
Sbjct: 35  CRNCIHPTVFSVLF 48


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 169 CRYCLHNPKFGIVF 128
           CR C+H   F ++F
Sbjct: 483 CRNCIHPTVFSVLF 496


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,794
Number of Sequences: 438
Number of extensions: 3518
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)