Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11p06
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    33   0.036
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   5.5  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    25   9.6  

>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 401 FRFLYTRVLRSLSA*CDPHPGNAIPSRVMRSPAG*C 294
           FRFL  ++  S    CDPHPGN +   V ++ AG C
Sbjct: 327 FRFLAFQMFHSKQVHCDPHPGNIL---VRKNQAGLC 359


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 73  FNQIMFKIYEILINLTQFYKVIAPAVCIFHEYYLLIIFN 189
           F++  F I  +L+ +  F  +  P +   + +YL  +FN
Sbjct: 293 FSKKSFLIVSVLLLIAHFNTIFHPFILADNRHYLFYVFN 331


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 436 GLR*HTTPPNYESLVILLNYTCII--ILVVSCIHTYTYKLH 552
           G +  T PP+    V++     +   I + +CI+  T+KLH
Sbjct: 137 GYQSETAPPSIRGTVVVTYQLFVTGGIFIAACINMGTHKLH 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,528
Number of Sequences: 5004
Number of extensions: 65482
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)