Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11p06
         (658 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13622-1|CAA73944.1| 1587|Homo sapiens latent TGF-beta binding p...    31   2.7  
Z83844-3|CAI20370.2|  701|Homo sapiens SH3-domain binding protei...    31   3.6  
CR456576-1|CAG30462.1|  701|Homo sapiens SH3BP1 protein.               31   3.6  
BC008282-1|AAH08282.1|  621|Homo sapiens SH3BP1 protein protein.       31   3.6  
AY364241-1|AAQ76800.1|  632|Homo sapiens SH3 domain binding prot...    31   3.6  
Y13620-1|CAA73942.1| 1394|Homo sapiens B-cell CLL/lymphoma 9 pro...    31   4.8  
BC116451-1|AAI16452.1| 1426|Homo sapiens B-cell CLL/lymphoma 9 p...    31   4.8  
AL359207-1|CAI15198.1| 1426|Homo sapiens B-cell CLL/lymphoma 9 p...    31   4.8  
AF051345-1|AAC39880.2| 1624|Homo sapiens latent transforming gro...    31   4.8  
AF051344-1|AAC39879.2| 1557|Homo sapiens latent transforming gro...    31   4.8  
BC130437-1|AAI30438.1|  504|Homo sapiens DMRT-like family A1 pro...    30   6.3  
BC130435-1|AAI30436.1|  504|Homo sapiens DMRT-like family A1 pro...    30   6.3  
AL161730-1|CAH73857.1|  504|Homo sapiens DMRT-like family A1 pro...    30   6.3  
AK096011-1|BAC04672.1|  504|Homo sapiens protein ( Homo sapiens ...    30   6.3  

>Y13622-1|CAA73944.1| 1587|Homo sapiens latent TGF-beta binding
           protein-4 protein.
          Length = 1587

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -2

Query: 444 PQPHSAPGCREGSQISLPIYQGTTIP-IRVMRPPSG*CDPQPGNAIPSRVMRSPAG 280
           P+P   P  R G ++ LP     T P I    P SG C   P    P R +  P+G
Sbjct: 475 PRPEPRPDPRPGPELPLPSIPAWTGPEIPESGPSSGMCQRNPQVCGPGRCISRPSG 530


>Z83844-3|CAI20370.2|  701|Homo sapiens SH3-domain binding protein 1
           protein.
          Length = 701

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = -2

Query: 444 PQPHSAPGCRE-GSQISLPI-YQGTTIPIRVMRPPSG*CDPQPGNAIPSRVMRSPAG*CD 271
           P P   PG    G+  +LP    G+++    + PP     PQP     SR  RSPA    
Sbjct: 588 PAPPLPPGSGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPARR-QSR--RSPASPSP 644

Query: 270 PQPGNAIPSRVMRSPPGSLD 211
             PG A PS V  S P  +D
Sbjct: 645 ASPGPASPSPVSLSNPAQVD 664


>CR456576-1|CAG30462.1|  701|Homo sapiens SH3BP1 protein.
          Length = 701

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = -2

Query: 444 PQPHSAPGCRE-GSQISLPI-YQGTTIPIRVMRPPSG*CDPQPGNAIPSRVMRSPAG*CD 271
           P P   PG    G+  +LP    G+++    + PP     PQP     SR  RSPA    
Sbjct: 588 PAPPLPPGSGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPARR-QSR--RSPASPSP 644

Query: 270 PQPGNAIPSRVMRSPPGSLD 211
             PG A PS V  S P  +D
Sbjct: 645 ASPGPASPSPVSLSNPAQVD 664


>BC008282-1|AAH08282.1|  621|Homo sapiens SH3BP1 protein protein.
          Length = 621

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = -2

Query: 444 PQPHSAPGCRE-GSQISLPI-YQGTTIPIRVMRPPSG*CDPQPGNAIPSRVMRSPAG*CD 271
           P P   PG    G+  +LP    G+++    + PP     PQP     SR  RSPA    
Sbjct: 508 PAPPLPPGSGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPARR-QSR--RSPASPSP 564

Query: 270 PQPGNAIPSRVMRSPPGSLD 211
             PG A PS V  S P  +D
Sbjct: 565 ASPGPASPSPVSLSNPAQVD 584


>AY364241-1|AAQ76800.1|  632|Homo sapiens SH3 domain binding protein
           1 protein.
          Length = 632

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = -2

Query: 444 PQPHSAPGCRE-GSQISLPI-YQGTTIPIRVMRPPSG*CDPQPGNAIPSRVMRSPAG*CD 271
           P P   PG    G+  +LP    G+++    + PP     PQP     SR  RSPA    
Sbjct: 519 PAPPLPPGSGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPARR-QSR--RSPASPSP 575

Query: 270 PQPGNAIPSRVMRSPPGSLD 211
             PG A PS V  S P  +D
Sbjct: 576 ASPGPASPSPVSLSNPAQVD 595


>Y13620-1|CAA73942.1| 1394|Homo sapiens B-cell CLL/lymphoma 9 protein.
          Length = 1394

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 227  GDRITRLGIALPGWGSHYPAGDRITRLGIALPGWGSHYP 343
            G++  R+G+ALPG G   P G     LG A P    H P
Sbjct: 1278 GEQAPRMGLALPGMGGPGPVGTPDIPLGTA-PSMPGHNP 1315


>BC116451-1|AAI16452.1| 1426|Homo sapiens B-cell CLL/lymphoma 9
            protein.
          Length = 1426

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 227  GDRITRLGIALPGWGSHYPAGDRITRLGIALPGWGSHYP 343
            G++  R+G+ALPG G   P G     LG A P    H P
Sbjct: 1278 GEQAPRMGLALPGMGGPGPVGTPDIPLGTA-PSMPGHNP 1315


>AL359207-1|CAI15198.1| 1426|Homo sapiens B-cell CLL/lymphoma 9
            protein.
          Length = 1426

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 227  GDRITRLGIALPGWGSHYPAGDRITRLGIALPGWGSHYP 343
            G++  R+G+ALPG G   P G     LG A P    H P
Sbjct: 1278 GEQAPRMGLALPGMGGPGPVGTPDIPLGTA-PSMPGHNP 1315


>AF051345-1|AAC39880.2| 1624|Homo sapiens latent transforming growth
           factor-beta binding protein 4L protein.
          Length = 1624

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -2

Query: 444 PQPHSAPGCREGSQISLPIYQGTTIP-IRVMRPPSG*CDPQPGNAIPSRVMRSPAG 280
           P+P   P  R G +  LP     T P I    P SG C   P    P R +  P+G
Sbjct: 512 PRPEPRPDPRPGPEFPLPSIPAWTGPEIPESGPSSGMCQRNPQVCGPGRCISRPSG 567


>AF051344-1|AAC39879.2| 1557|Homo sapiens latent transforming growth
           factor-beta binding protein 4S protein.
          Length = 1557

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -2

Query: 444 PQPHSAPGCREGSQISLPIYQGTTIP-IRVMRPPSG*CDPQPGNAIPSRVMRSPAG 280
           P+P   P  R G +  LP     T P I    P SG C   P    P R +  P+G
Sbjct: 445 PRPEPRPDPRPGPEFPLPSIPAWTGPEIPESGPSSGMCQRNPQVCGPGRCISRPSG 500


>BC130437-1|AAI30438.1|  504|Homo sapiens DMRT-like family A1
           protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -2

Query: 453 GVLPQPHSAPGCREGS----QISLPIYQGTTIPIRVMRPPSG*CDPQPGNAIPSRVMRSP 286
           GV  +PH APG    +      +LP+  G  +P   +RPPS         A  +    S 
Sbjct: 12  GVSGRPHLAPGLVVAAPPPPSPALPVPSGMQVPPAFLRPPSLFLRAAAA-AAAAAAATSG 70

Query: 285 AG*CDPQPG 259
           +G C P PG
Sbjct: 71  SGGCPPAPG 79


>BC130435-1|AAI30436.1|  504|Homo sapiens DMRT-like family A1
           protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -2

Query: 453 GVLPQPHSAPGCREGS----QISLPIYQGTTIPIRVMRPPSG*CDPQPGNAIPSRVMRSP 286
           GV  +PH APG    +      +LP+  G  +P   +RPPS         A  +    S 
Sbjct: 12  GVSGRPHLAPGLVVAAPPPPSPALPVPSGMQVPPAFLRPPSLFLRAAAA-AAAAAAATSG 70

Query: 285 AG*CDPQPG 259
           +G C P PG
Sbjct: 71  SGGCPPAPG 79


>AL161730-1|CAH73857.1|  504|Homo sapiens DMRT-like family A1
           protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -2

Query: 453 GVLPQPHSAPGCREGS----QISLPIYQGTTIPIRVMRPPSG*CDPQPGNAIPSRVMRSP 286
           GV  +PH APG    +      +LP+  G  +P   +RPPS         A  +    S 
Sbjct: 12  GVSGRPHLAPGLVVAAPPPPSPALPVPSGMQVPPAFLRPPSLFLRAAAA-AAAAAAATSG 70

Query: 285 AG*CDPQPG 259
           +G C P PG
Sbjct: 71  SGGCPPAPG 79


>AK096011-1|BAC04672.1|  504|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38692 fis, clone KIDNE2001713, weakly similar to
           Oreochromis niloticus sex-determining protein DMO mRNA.
           ).
          Length = 504

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -2

Query: 453 GVLPQPHSAPGCREGS----QISLPIYQGTTIPIRVMRPPSG*CDPQPGNAIPSRVMRSP 286
           GV  +PH APG    +      +LP+  G  +P   +RPPS         A  +    S 
Sbjct: 12  GVSGRPHLAPGLVVAAPPPPSPALPVPSGMQVPPAFLRPPSLFLRAAAA-AAAAAAATSG 70

Query: 285 AG*CDPQPG 259
           +G C P PG
Sbjct: 71  SGGCPPAPG 79


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,238,740
Number of Sequences: 237096
Number of extensions: 2978519
Number of successful extensions: 5644
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5356
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)